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Ensembl's human non-coding and protein coding genes are used to automatically find DNA pattern motifs. The Backus-Naur form (BNF) grammar for regular expressions (RE) is used by genetic programming to ensure the generated strings are legal.…

Biomolecules · Quantitative Biology 2010-02-02 W. B. Langdon , Olivia Sanchez Graillet , A. P. Harrison

Regular expression (RE) matching is a very common functionality that scans a text to find occurrences of patterns specified by an RE; it includes the simpler function of RE recognition. Here we address RE parsing, which subsumes matching by…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-11 Angelo Borsotti , Luca Breveglieri , Stefano Crespi Reghizzi , Angelo Morzenti

Regular pattern matching is used in numerous application domains, including text processing, bioinformatics, and network security. Patterns are typically expressed with an extended syntax of regular expressions that include the…

Formal Languages and Automata Theory · Computer Science 2022-09-14 Lingkun Kong , Qixuan Yu , Agnishom Chattopadhyay , Alexis Le Glaunec , Yi Huang , Konstantinos Mamouras , Kaiyuan Yang

In models to generate program source code from natural language, representing this code in a tree structure has been a common approach. However, existing methods often fail to generate complex code correctly due to a lack of ability to…

Computation and Language · Computer Science 2018-08-31 Shirley Anugrah Hayati , Raphael Olivier , Pravalika Avvaru , Pengcheng Yin , Anthony Tomasic , Graham Neubig

Estimating the effort of software systems is an essential topic in software engineering, carrying out an estimation process reliably and accurately for a software forms a vital part of the software development phases. Many researchers have…

Software Engineering · Computer Science 2018-05-03 Najla Akram , AL-Saati , Taghreed Riyadh Alreffaee

Matching regexes (regular expressions) is a common problem in many areas of computer science, with requirements on high speed and robust performance. Regexes with backreferences allow one to express certain patterns (even beyond regular)…

Logic in Computer Science · Computer Science 2026-04-16 Vojtěch Havlena , Lukáš Holík , Ondřej Lengál , Jan Vašák , Sabína Gulčíková

Byte-Pair Encoding (BPE) is a widely used method for subword tokenization, with origins in grammar-based text compression. It is employed in a variety of language processing tasks such as machine translation or large language model (LLM)…

Data Structures and Algorithms · Computer Science 2024-11-14 László Kozma , Johannes Voderholzer

Software Testing is a process to identify the quality and reliability of software, which can be achieved through the help of proper test data. However, doing this manually is a difficult task due to the presence of number of predicate nodes…

Software Engineering · Computer Science 2014-01-22 Yeresime Suresh , Santanu Ku. Rath

Interpretability is crucial for machine learning in many scenarios such as quantitative finance, banking, healthcare, etc. Symbolic regression (SR) is a classic interpretable machine learning method by bridging X and Y using mathematical…

Methodology · Statistics 2020-01-17 Ying Jin , Weilin Fu , Jian Kang , Jiadong Guo , Jian Guo

The image synthesis technique is relatively well established which can generate facial images that are indistinguishable even by human beings. However, all of these approaches uses gradients to condition the output, resulting in the…

Computer Vision and Pattern Recognition · Computer Science 2021-10-25 Feng Liu , HanYang Wang , Jiahao Zhang , Ziwang Fu , Aimin Zhou , Jiayin Qi , Zhibin Li

Existing Programming-By-Example (PBE) systems often rely on simplified benchmarks that fail to capture the high structural complexity-such as deeper nesting and frequent Unions-of real-world regexes. To overcome the resulting performance…

Programming Languages · Computer Science 2026-03-27 Seongmin Kim , Hyunjoon Cheon , Su-Hyeon Kim , Yo-Sub Han , Sang-Ki Ko

This paper proposes Genetic Algorithm with Border Trades (GAB), a novel modification of the standard genetic algorithm that enhances exploration by incorporating new chromosome patterns in the breeding process. This approach significantly…

Machine Learning · Computer Science 2025-06-27 Qingchuan Lyu

Program synthesis is the task of automatically generating a program consistent with a specification. Recent years have seen proposal of a number of neural approaches for program synthesis, many of which adopt a sequence generation paradigm…

Machine Learning · Computer Science 2018-05-23 Rudy Bunel , Matthew Hausknecht , Jacob Devlin , Rishabh Singh , Pushmeet Kohli

Ensemble learning is a powerful paradigm that has been usedin the top state-of-the-art machine learning methods like Random Forestsand XGBoost. Inspired by the success of such methods, we have devel-oped a new Genetic Programming method…

Neural and Evolutionary Computing · Computer Science 2020-01-22 Nuno M. Rodrigues , João E. Batista , Sara Silva

Generating paraphrases, that is, different variations of a sentence conveying the same meaning, is an important yet challenging task in NLP. Automatically generating paraphrases has its utility in many NLP tasks like question answering,…

Computation and Language · Computer Science 2018-11-13 Milan Aggarwal , Nupur Kumari , Ayush Bansal , Balaji Krishnamurthy

Program synthesis aims to {\it automatically} find programs from an underlying programming language that satisfy a given specification. While this has the potential to revolutionize computing, how to search over the vast space of programs…

Neural and Evolutionary Computing · Computer Science 2022-03-01 Yuan Yuan , Wolfgang Banzhaf

Choosing the most adequate kernel is crucial in many Machine Learning applications. Gaussian Process is a state-of-the-art technique for regression and classification that heavily relies on a kernel function. However, in the Gaussian…

Machine Learning · Computer Science 2019-10-15 Ibai Roman , Roberto Santana , Alexander Mendiburu , Jose A. Lozano

Controllable text generation is a fundamental aspect of natural language generation, with numerous methods proposed for different constraint types. However, these approaches often require significant architectural or decoding modifications,…

Computation and Language · Computer Science 2023-09-21 Xin Zheng , Hongyu Lin , Xianpei Han , Le Sun

Due to the practical importance of regular expressions (regexes, for short), there has been a lot of research to automatically generate regexes from positive and negative string examples. We tackle the problem of learning regexes faster…

Machine Learning · Computer Science 2022-05-24 Su-Hyeon Kim , Hyunjoon Cheon , Yo-Sub Han , Sang-Ki Ko

With neural networks having demonstrated their versatility and benefits, the need for their optimal performance is as prevalent as ever. A defining characteristic, hyperparameters, can greatly affect its performance. Thus engineers go…

Neural and Evolutionary Computing · Computer Science 2020-09-21 Keshav Ganapathy