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The COVID-19 pandemic has sparked unprecedented mobilization of scientists, generating a deluge of papers that makes it hard for researchers to keep track and explore new directions. Search engines are designed for targeted queries, not for…

Information Retrieval · Computer Science 2020-09-22 Tom Hope , Jason Portenoy , Kishore Vasan , Jonathan Borchardt , Eric Horvitz , Daniel S. Weld , Marti A. Hearst , Jevin West

Information overload is a prevalent challenge in many high-value domains. A prominent case in point is the explosion of the biomedical literature on COVID-19, which swelled to hundreds of thousands of papers in a matter of months. In…

Objective: To discover candidate drugs to repurpose for COVID-19 using literature-derived knowledge and knowledge graph completion methods. Methods: We propose a novel, integrative, and neural network-based literature-based discovery (LBD)…

Computation and Language · Computer Science 2021-02-10 Rui Zhang , Dimitar Hristovski , Dalton Schutte , Andrej Kastrin , Marcelo Fiszman , Halil Kilicoglu

The novel coronavirus (SARS-CoV-2) has led to a pandemic. The current testing regime based on Reverse Transcription-Polymerase Chain Reaction for SARS-CoV-2 has been unable to keep up with testing demands, and also suffers from a relatively…

There have been more than 850,000 confirmed cases and over 48,000 deaths from the human coronavirus disease 2019 (COVID-19) pandemic, caused by novel severe acute respiratory syndrome coronavirus (SARS-CoV-2), in the United States alone.…

Quantitative Methods · Quantitative Biology 2020-05-25 Xiangxiang Zeng , Xiang Song , Tengfei Ma , Xiaoqin Pan , Yadi Zhou , Yuan Hou , Zheng Zhang , George Karypis , Feixiong Cheng

In recent years, with the appearance of the COVID-19 pandemic, numerous publications relevant to this disease have been issued. Because of the massive volume of publications, an efficient retrieval system is necessary to provide researchers…

Information Retrieval · Computer Science 2025-06-24 Hoang-An Trieu , Dinh-Truong Do , Chau Nguyen , Vu Tran , Minh Le Nguyen

The world has witnessed unprecedented human and economic loss from the COVID-19 disease, caused by the novel coronavirus SARS-CoV-2. Extensive research is being conducted across the globe to identify therapeutic agents against the…

Biomolecules · Quantitative Biology 2020-04-09 Rohit Batra , Henry Chan , Ganesh Kamath , Rampi Ramprasad , Mathew J. Cherukara , Subramanian Sankaranarayanan

With the COVID-19 pandemic, there is a growing urgency for medical community to keep up with the accelerating growth in the new coronavirus-related literature. As a result, the COVID-19 Open Research Dataset Challenge has released a corpus…

Computation and Language · Computer Science 2020-06-04 Virapat Kieuvongngam , Bowen Tan , Yiming Niu

The COVID-19 pandemic requires a fast response from researchers to help address biological, medical and public health issues to minimize its impact. In this rapidly evolving context, scholars, professionals and the public may need to…

Digital Libraries · Computer Science 2020-04-23 Kayvan Kousha , Mike Thelwall

This work describes our two approaches for the background linking task of TREC 2020 News Track. The main objective of this task is to recommend a list of relevant articles that the reader should refer to in order to understand the context…

Information Retrieval · Computer Science 2020-07-27 Anup Anand Deshmukh , Udhav Sethi

We present an overview of the TREC-COVID Challenge, an information retrieval (IR) shared task to evaluate search on scientific literature related to COVID-19. The goals of TREC-COVID include the construction of a pandemic search test…

Information Retrieval · Computer Science 2021-04-21 Kirk Roberts , Tasmeer Alam , Steven Bedrick , Dina Demner-Fushman , Kyle Lo , Ian Soboroff , Ellen Voorhees , Lucy Lu Wang , William R Hersh

The SARS-CoV-2 coronavirus is the cause of the COVID-19 disease in humans. Like many coronaviruses, it can adapt to different hosts and evolve into different lineages. It is well-known that the major SARS-CoV-2 lineages are characterized by…

Machine Learning · Computer Science 2022-11-23 Sarwan Ali

Timely access to accurate scientific literature in the battle with the ongoing COVID-19 pandemic is critical. This unprecedented public health risk has motivated research towards understanding the disease in general, identifying drugs to…

The COVID-19 pandemic has been accompanied by an `infodemic' -- of accurate and inaccurate health information across social media. Detecting misinformation amidst dynamically changing information landscape is challenging; identifying…

Human-Computer Interaction · Computer Science 2022-05-20 Harry Wang , Sharath Chandra Guntuku

The abundance of literature related to the widespread COVID-19 pandemic is beyond manual inspection of a single expert. Development of systems, capable of automatically processing tens of thousands of scientific publications with the aim to…

Computation and Language · Computer Science 2020-11-11 Matej Martinc , Blaž Škrlj , Sergej Pirkmajer , Nada Lavrač , Bojan Cestnik , Martin Marzidovšek , Senja Pollak

Early detection and characterization of coronavirus disease (COVID-19), caused by SARS-CoV-2, remain critical for effective clinical response and public-health planning. The global availability of large-scale viral sequence data presents…

Machine Learning · Computer Science 2025-12-12 Sarwan Ali , Taslim Murad

Background: The COVID-19 pandemic has caused severe impacts on health systems worldwide. Its critical nature and the increased interest of individuals and organizations to develop countermeasures to the problem has led to a surge of new…

Information Retrieval · Computer Science 2024-01-31 Marcos V. L. Pivetta

COVID-19 is one of the most important topic these days, specifically on search engines and news. While fake news are easily shared, scientific papers are reliable sources where information can be extracted. With about 24,000 scientific…

Digital Libraries · Computer Science 2020-05-04 Bernard Dousset , Josiane Mothe

As of 2020 when the COVID-19 pandemic is full-blown on a global scale, people's need to have access to legitimate information regarding COVID-19 is more urgent than ever, especially via online media where the abundance of irrelevant…

Computation and Language · Computer Science 2020-09-15 Thai Quoc Hoang , Phuong Thu Vu

In the past several months, COVID-19 has spread over the globe and caused severe damage to the people and the society. In the context of this severe situation, an effective drug discovery method to generate potential drugs is extremely…

Machine Learning · Computer Science 2021-04-26 Tianyue Cheng , Tianchi Fan , Landi Wang