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Discrete models have a long tradition in engineering, including finite state machines, Boolean networks, Petri nets, and agent-based models. Of particular importance is the question of how the model structure constrains its dynamics. This…

Molecular Networks · Quantitative Biology 2011-08-02 Reinhard Laubenbacher , David Murrugarra , Alan Veliz-Cuba

A categorical framework for modeling and analyzing systems in a broad sense is proposed. These systems should be thought of as `machines' with inputs and outputs, carrying some sort of signal that occurs through some notion of time. Special…

Category Theory · Mathematics 2019-03-18 Patrick Schultz , David I. Spivak , Christina Vasilakopoulou

A (closed) dynamical system is a notion of how things can be, together with a notion of how they may change given how they are. The idea and mathematics of closed dynamical systems has proven incredibly useful in those sciences that can…

Category Theory · Mathematics 2021-02-05 David Jaz Myers

Open dynamical systems are mathematical models of machines that take input, change their internal state, and produce output. For example, one may model anything from neurons to robots in this way. Several open dynamical systems can be…

Dynamical Systems · Mathematics 2016-02-25 David I. Spivak

We extend our earlier work on the compositional structure of cybernetic systems in order to account for the embodiment of such systems. All their interactions proceed through their bodies' boundaries: sensations impinge on their surfaces,…

Adaptation and Self-Organizing Systems · Physics 2022-11-04 Toby St Clere Smithe

An important problem in the theory of finite dynamical systems is to link the structure of a system with its dynamics. This paper contains such a link for a family of nonlinear systems over the field with two elements. For systems that can…

Combinatorics · Mathematics 2024-11-19 Omar Colon-Reyes , Reinhard Laubenbacher , Bodo Pareigis

This article presents a general description of dynamical systems using the language of enriched functors and enriched natural transformations. This framework is essential to establish the equivalence of three descriptions of dynamics -- a…

Category Theory · Mathematics 2025-09-09 Suddhasattwa Das , Tomoharu Suda

Awodey, later with Newstead, showed how polynomial functors with extra structure (termed ``natural models'') hold within them the categorical semantics for dependent type theory. Their work presented these ideas clearly but ultimately led…

Logic in Computer Science · Computer Science 2026-03-03 C. B. Aberlé , David I. Spivak

We present categories of open dynamical systems with general time evolution as categories of coalgebras opindexed by polynomial interfaces, and show how this extends the coalgebraic framework to capture common scientific applications such…

Category Theory · Mathematics 2023-08-01 Toby St. Clere Smithe

Many complex systems satisfy a set of constraints on their degrees of freedom, and at the same time, they are able to work and adapt to different conditions. Here, we describe the emergence of this ability in a simplified model in which the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Ginestra Bianconi , Roberto Mulet

Organizing physics has been a long-standing preoccupation of applied category theory, going back at least to Lawvere. We contribute to this research thread by noticing that Hamiltonian mechanics and gradient descent depend crucially on a…

Category Theory · Mathematics 2025-09-26 Matteo Capucci , Owen Lynch , David I. Spivak

In this document, we collect a list of categorical structures on the category $\mathbf{Poly}$ of polynomial functors. There is no implied claim that this list is in any way complete. It includes: infinitely many monoidal structures, all but…

Category Theory · Mathematics 2025-09-29 David I. Spivak

We present a unified framework for categorical systems theory which packages a collection of open systems, their interactions, and their maps into a symmetric monoidal loose right module of systems over a symmetric monoidal double category…

Category Theory · Mathematics 2025-05-30 Sophie Libkind , David Jaz Myers

We develop a new framework for the study of complex continuous time dynamical systems based on viewing them as collections of interacting control modules. This framework is inspired by and builds upon the groupoid formalism of Golubitsky,…

Dynamical Systems · Mathematics 2011-04-07 R. E. Lee DeVille , Eugene Lerman

Temporal logics are an obvious high-level descriptive companion formalism to dynamical systems which model behavior as deterministic evolution of state over time. A wide variety of distinct temporal logics applicable to dynamical systems…

Logic in Computer Science · Computer Science 2012-12-11 Baltasar Trancón y Widemann

This monograph is a study of the category of polynomial endofunctors on the category of sets and its applications to modeling interaction protocols and dynamical systems. We assume basic categorical background and build the categorical…

Category Theory · Mathematics 2024-08-20 Nelson Niu , David I. Spivak

Recently, there has been renewed interest in the theory and applications of de Paiva's dialectica categories and their relationship to the category of polynomial functors. Both fall under the theory of generalized polynomial categories,…

Category Theory · Mathematics 2023-12-15 Joseph Dorta , Samantha Jarvis , Nelson Niu

Natural organized systems adapt to internal and external pressures and this happens at all levels of the abstraction hierarchy. Wanting to think clearly about this idea motivates our paper, and so the idea is elaborated extensively in the…

Category Theory · Mathematics 2023-08-01 Brandon T. Shapiro , David I. Spivak

Many forms of dependence manifest themselves over time, with behavior of variables in dynamical systems as a paradigmatic example. This paper studies temporal dependence in dynamical systems from a logical perspective, by enriching a…

Logic in Computer Science · Computer Science 2024-03-29 Alexandru Baltag , Johan van Benthem , Dazhu Li

For classical dynamical systems, the polynomial entropy serves as a refined invariant of the topological entropy. In the setting of categorical dynamical systems, that is, triangulated categories endowed with an endofunctor, we develop the…

Algebraic Geometry · Mathematics 2021-03-23 Yu-Wei Fan , Lie Fu , Genki Ouchi
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