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Recent years have witnessed an upsurge in research interests and applications of machine learning on graphs. However, manually designing the optimal machine learning algorithms for different graph datasets and tasks is inflexible,…

The development of scalable, representative, and widely adopted benchmarks for graph data systems have been a question for which answers has been sought for decades. We conduct an in-depth study of the existing literature on benchmarks for…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-23 Miyuru Dayarathna , Toyotaro Suzumura

Text-Attributed Graphs (TAGs) augment graph structures with natural language descriptions, facilitating detailed depictions of data and their interconnections across various real-world settings. However, existing TAG datasets predominantly…

Computation and Language · Computer Science 2024-11-26 Zhuofeng Li , Zixing Gou , Xiangnan Zhang , Zhongyuan Liu , Sirui Li , Yuntong Hu , Chen Ling , Zheng Zhang , Liang Zhao

Graph neural networks (GNNs) for temporal graphs have recently attracted increasing attentions, where a common assumption is that the class set for nodes is closed. However, in real-world scenarios, it often faces the open set problem with…

Machine Learning · Computer Science 2023-05-26 Kaituo Feng , Changsheng Li , Xiaolu Zhang , Jun Zhou

Future link prediction is a fundamental challenge in various real-world dynamic systems. To address this, numerous temporal graph neural networks (temporal GNNs) and benchmark datasets have been developed. However, these datasets often…

Machine Learning · Computer Science 2025-03-18 Lu Yi , Jie Peng , Yanping Zheng , Fengran Mo , Zhewei Wei , Yuhang Ye , Yue Zixuan , Zengfeng Huang

As the field of Graph Neural Networks (GNN) continues to grow, it experiences a corresponding increase in the need for large, real-world datasets to train and test new GNN models on challenging, realistic problems. Unfortunately, such graph…

Machine Learning · Computer Science 2023-06-12 Minji Yoon , Yue Wu , John Palowitch , Bryan Perozzi , Ruslan Salakhutdinov

The rise of graph analytic systems has created a need for ways to measure and compare the capabilities of these systems. Graph analytics present unique scalability difficulties. The machine learning, high performance computing, and visual…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-07 Siddharth Samsi , Vijay Gadepally , Michael Hurley , Michael Jones , Edward Kao , Sanjeev Mohindra , Paul Monticciolo , Albert Reuther , Steven Smith , William Song , Diane Staheli , Jeremy Kepner

Heterogeneous graph neural networks (HGNNs) have been blossoming in recent years, but the unique data processing and evaluation setups used by each work obstruct a full understanding of their advancements. In this work, we present a…

Machine Learning · Computer Science 2022-01-03 Qingsong Lv , Ming Ding , Qiang Liu , Yuxiang Chen , Wenzheng Feng , Siming He , Chang Zhou , Jianguo Jiang , Yuxiao Dong , Jie Tang

Machine learning on graphs has been extensively studied in both academic and industry. However, as the literature on graph learning booms with a vast number of emerging methods and techniques, it becomes increasingly difficult to manually…

Machine Learning · Computer Science 2021-12-21 Ziwei Zhang , Xin Wang , Wenwu Zhu

Graph Neural Networks (GNN) have shown a strong potential to be integrated into commercial products for network control and management. Early works using GNN have demonstrated an unprecedented capability to learn from different network…

Networking and Internet Architecture · Computer Science 2021-10-05 Miquel Ferriol-Galmés , José Suárez-Varela , Krzysztof Rusek , Pere Barlet-Ros , Albert Cabellos-Aparicio

Graphs play an important role in representing complex relationships in various domains like social networks, knowledge graphs, and molecular discovery. With the advent of deep learning, Graph Neural Networks (GNNs) have emerged as a…

Machine Learning · Computer Science 2024-06-05 Wenqi Fan , Shijie Wang , Jiani Huang , Zhikai Chen , Yu Song , Wenzhuo Tang , Haitao Mao , Hui Liu , Xiaorui Liu , Dawei Yin , Qing Li

Machine learning provides a valuable tool for analyzing high-dimensional functional neuroimaging data, and is proving effective in predicting various neurological conditions, psychiatric disorders, and cognitive patterns. In functional…

Machine Learning · Computer Science 2024-11-25 Anwar Said , Roza G. Bayrak , Tyler Derr , Mudassir Shabbir , Daniel Moyer , Catie Chang , Xenofon Koutsoukos

Graph Structure Learning (GSL) has recently garnered considerable attention due to its ability to optimize both the parameters of Graph Neural Networks (GNNs) and the computation graph structure simultaneously. Despite the proliferation of…

Machine Learning · Computer Science 2023-10-10 Zhixun Li , Liang Wang , Xin Sun , Yifan Luo , Yanqiao Zhu , Dingshuo Chen , Yingtao Luo , Xiangxin Zhou , Qiang Liu , Shu Wu , Liang Wang , Jeffrey Xu Yu

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Machine learning models that learn from dynamic graphs face nontrivial challenges in learning and inference as both nodes and edges change over time. The existing large-scale graph benchmark datasets that are widely used by the community…

Graph machine learning (GML) has been successfully applied across a wide range of tasks. Nonetheless, GML faces significant challenges in generalizing over out-of-distribution (OOD) data, which raises concerns about its wider applicability.…

Machine Learning · Computer Science 2024-10-17 Jing Ma

Graph representation learning has recently been applied to a broad spectrum of problems ranging from computer graphics and chemistry to high energy physics and social media. The popularity of graph neural networks has sparked interest, both…

Machine Learning · Computer Science 2020-11-05 Fabrizio Frasca , Emanuele Rossi , Davide Eynard , Ben Chamberlain , Michael Bronstein , Federico Monti

Multimodal Attributed Graphs (MAGs) are ubiquitous in real-world applications, encompassing extensive knowledge through multimodal attributes attached to nodes (e.g., texts and images) and topological structure representing node…

Machine Learning · Computer Science 2025-02-28 Hao Yan , Chaozhuo Li , Jun Yin , Zhigang Yu , Weihao Han , Mingzheng Li , Zhengxin Zeng , Hao Sun , Senzhang Wang

The task of data integration for multi-omics data has emerged as a powerful strategy to unravel the complex biological underpinnings of cancer. Recent advancements in graph neural networks (GNNs) offer an effective framework to model…

Machine Learning · Computer Science 2025-06-24 Payam Zohari , Mostafa Haghir Chehreghani

The Internet is composed of networks, called Autonomous Systems (or, ASes), interconnected to each other, thus forming a large graph. While both the AS-graph is known and there is a multitude of data available for the ASes (i.e., node…

Networking and Internet Architecture · Computer Science 2022-10-26 Dimitrios Panteleimon Giakatos , Sofia Kostoglou , Pavlos Sermpezis , Athena Vakali