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Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

An essential component in modern solvers for mixed-integer (linear) programs (MIPs) is the separation of additional inequalities (cutting planes) to tighten the linear programming relaxation. Various algorithmic decisions are necessary when…

Optimization and Control · Mathematics 2022-06-24 Timo Berthold , Matteo Francobaldi , Gregor Hendel

The derivation trees of a tree adjoining grammar provide a first insight into the sentence semantics, and are thus prime targets for generation systems. We define a formalism, feature-based regular tree grammars, and a translation from…

Computation and Language · Computer Science 2015-03-13 Sylvain Schmitz , Joseph Le Roux

Recently, span-based constituency parsing has achieved competitive accuracies with extremely simple models by using bidirectional RNNs to model "spans". However, the minimal span parser of Stern et al (2017a) which holds the current state…

Computation and Language · Computer Science 2018-05-23 Juneki Hong , Liang Huang

We propose two fast neural combinatory models for constituency parsing: binary and multi-branching. Our models decompose the bottom-up parsing process into 1) classification of tags, labels, and binary orientations or chunks and 2) vector…

Computation and Language · Computer Science 2021-06-15 Zhousi Chen , Longtu Zhang , Aizhan Imankulova , Mamoru Komachi

Regression by composition provides a flexible framework for constructing conditional distributions through sequential group actions. However, when multiple flows act on the same distribution, the model becomes non-identifiable, leading to…

Methodology · Statistics 2026-03-30 Safaa K. Kadhem

Solving multiple parametrised related systems is an essential component of many numerical tasks, and learning from the already solved systems will make this process faster. In this work, we propose a novel probabilistic linear solver over…

Machine Learning · Statistics 2025-08-21 Disha Hegde , Jon Cockayne

Random forests are a powerful method for non-parametric regression, but are limited in their ability to fit smooth signals, and can show poor predictive performance in the presence of strong, smooth effects. Taking the perspective of random…

Machine Learning · Statistics 2020-09-08 Rina Friedberg , Julie Tibshirani , Susan Athey , Stefan Wager

While modern biotechnologies allow synthesizing new proteins and function measurements at scale, efficiently exploring a protein sequence space and engineering it remains a daunting task due to the vast sequence space of any given protein.…

Biomolecules · Quantitative Biology 2024-01-15 Jiahao Qiu , Hui Yuan , Jinghong Zhang , Wentao Chen , Huazheng Wang , Mengdi Wang

Convolutional Neural Networks (CNN) possess many positive qualities when it comes to spatial raster data. Translation invariance enables CNNs to detect features regardless of their position in the scene. However, in some domains, like…

Machine Learning · Computer Science 2020-07-13 Arnas Uselis , Mantas Lukoševičius , Lukas Stasytis

Studies of image captioning are shifting towards a trend of a fully end-to-end paradigm by leveraging powerful visual pre-trained models and transformer-based generation architecture for more flexible model training and faster inference…

Computer Vision and Pattern Recognition · Computer Science 2022-11-18 Pengpeng Zeng , Jinkuan Zhu , Jingkuan Song , Lianli Gao

Neural parsers obtain state-of-the-art results on benchmark treebanks for constituency parsing -- but to what degree do they generalize to other domains? We present three results about the generalization of neural parsers in a zero-shot…

Computation and Language · Computer Science 2019-07-11 Daniel Fried , Nikita Kitaev , Dan Klein

In this paper, we propose DeepTree, a novel method for modeling trees based on learning developmental rules for branching structures instead of manually defining them. We call our deep neural model situated latent because its behavior is…

Machine Learning · Computer Science 2023-05-10 Xiaochen Zhou , Bosheng Li , Bedrich Benes , Songlin Fei , Sören Pirk

The randomized online-LOCAL model captures a number of models of computing; it is at least as strong as all of these models: - the classical LOCAL model of distributed graph algorithms, - the quantum version of the LOCAL model, - finitely…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-19 Anubhav Dhar , Eli Kujawa , Henrik Lievonen , Augusto Modanese , Mikail Muftuoglu , Jan Studený , Jukka Suomela

Threshold Autoregressive (TAR) models have been widely used by statisticians for non-linear time series forecasting during the past few decades, due to their simplicity and mathematical properties. On the other hand, in the forecasting…

Machine Learning · Computer Science 2022-11-17 Rakshitha Godahewa , Geoffrey I. Webb , Daniel Schmidt , Christoph Bergmeir

In this paper, we propose a novel BTG-forest-based alignment method. Based on a fast unsupervised initialization of parameters using variational IBM models, we synchronously parse parallel sentences top-down and align hierarchically under…

Computation and Language · Computer Science 2017-11-21 Hao Wang , Yves Lepage

We propose a principled method for autoencoding with random forests. Our strategy builds on foundational results from nonparametric statistics and spectral graph theory to learn a low-dimensional embedding of the model that optimally…

Machine Learning · Statistics 2026-01-16 Binh Duc Vu , Jan Kapar , Marvin Wright , David S. Watson

We introduce and study a notion of decomposition of planar point sets (or rather of their chirotopes) as trees decorated by smaller chirotopes. This decomposition is based on the concept of mutually avoiding sets (which we rephrase as…

Computational Geometry · Computer Science 2024-06-12 Mathilde Bouvel , Valentin Féray , Xavier Goaoc , Florent Koechlin

In forecasting multiple time series, accounting for the individual features of each sequence can be challenging. To address this, modern deep learning methods for time series analysis combine a shared (global) model with local layers,…

Machine Learning · Computer Science 2025-02-14 Luca Butera , Giovanni De Felice , Andrea Cini , Cesare Alippi

Computing an optimal classification tree that provably maximizes training performance within a given size limit, is NP-hard, and in practice, most state-of-the-art methods do not scale beyond computing optimal trees of depth three.…

Machine Learning · Computer Science 2025-01-15 Catalin E. Brita , Jacobus G. M. van der Linden , Emir Demirović
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