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Extracting table contents from documents such as scientific papers and financial reports and converting them into a format that can be processed by large language models is an important task in knowledge information processing. End-to-end…

Computer Vision and Pattern Recognition · Computer Science 2024-05-14 Takaya Kawakatsu

Processing large amounts of data is an essential problem of the big data era. Most of the data exchange is done via direct communication (using APIs) and well-structured file formats (JSON, XML, EDI, etc.), but a significant portion of the…

Information Retrieval · Computer Science 2020-07-17 Vladimir Bernstein , Andrei Afanassenkov

Charts are an excellent way to convey patterns and trends in data, but they do not facilitate further modeling of the data or close inspection of individual data points. We present a fully automated system for extracting the numerical…

Computer Vision and Pattern Recognition · Computer Science 2018-10-10 Mathieu Cliche , David Rosenberg , Dhruv Madeka , Connie Yee

In the era of data-driven intelligence, the paradox of data abundance and annotation scarcity has emerged as a critical bottleneck in the advancement of machine learning. This paper gives a detailed overview of Active Learning (AL), which…

Machine Learning · Computer Science 2025-11-27 Chiung-Yi Tseng , Junhao Song , Ziqian Bi , Tianyang Wang , Chia Xin Liang , Xinyuan Song , Ming Liu

Increasingly more research areas rely on machine learning methods to accelerate discovery while saving resources. Machine learning models, however, usually require large datasets of experimental or computational results, which in certain…

Machine Learning · Computer Science 2024-10-24 Elizaveta Surzhikova , Jonny Proppe

Automated knowledge extraction from scientific literature can potentially accelerate materials discovery. We have investigated an approach for extracting synthesis protocols for reticular materials from scientific literature using large…

Machine-learning from a disparate set of tables, a data lake, requires assembling features by merging and aggregating tables. Data discovery can extend autoML to data tables by automating these steps. We present an in-depth analysis of such…

Databases · Computer Science 2025-05-20 Riccardo Cappuzzo , Aimee Coelho , Felix Lefebvre , Paolo Papotti , Gael Varoquaux

The problem of poster generation for scientific papers is under-investigated. Posters often present the most important information of papers, and the task can be considered as a special form of document summarization. Previous studies focus…

Computation and Language · Computer Science 2021-12-17 Sheng Xu , Xiaojun Wan

Understanding key insights from full-text scholarly articles is essential as it enables us to determine interesting trends, give insight into the research and development, and build knowledge graphs. However, some of the interesting key…

Recently, significant progress has been made applying machine learning to the problem of table structure inference and extraction from unstructured documents. However, one of the greatest challenges remains the creation of datasets with…

Machine Learning · Computer Science 2021-11-22 Brandon Smock , Rohith Pesala , Robin Abraham

In this paper, we propose DEXTER, an end to end system to extract information from tables present in medical health documents, such as electronic health records (EHR) and explanation of benefits (EOB). DEXTER consists of four sub-system…

Computer Vision and Pattern Recognition · Computer Science 2022-07-19 Nandhinee PR , Harinath Krishnamoorthy , Koushik Srivatsan , Anil Goyal , Sudarsun Santhiappan

Automated data extraction from research texts has been steadily improving, with the emergence of large language models (LLMs) accelerating progress even further. Extracting data from plots in research papers, however, has been such a…

Computer Vision and Pattern Recognition · Computer Science 2025-03-18 Maciej P. Polak , Dane Morgan

With the tremendous increase in the amount of biological literature, developing automated methods for extracting big data from papers, building models and explaining big mechanisms becomes a necessity. We describe here our approach to…

Molecular Networks · Quantitative Biology 2017-06-14 Khaled Sayed , Cheryl A. Telmer , Adam A. Butchy , Natasa Miskov-Zivanov

Automated machine learning makes it easier for data scientists to develop pipelines by searching over possible choices for hyperparameters, algorithms, and even pipeline topologies. Unfortunately, the syntax for automated machine learning…

Machine Learning · Computer Science 2020-07-07 Guillaume Baudart , Martin Hirzel , Kiran Kate , Parikshit Ram , Avraham Shinnar

The effectiveness of the machine learning methods for real-world tasks depends on the proper structure of the modeling pipeline. The proposed approach is aimed to automate the design of composite machine learning pipelines, which is…

Large language models (LLMs) are increasingly touted as powerful tools for automating scientific information extraction. However, existing methods and tools often struggle with the realities of scientific literature: long-context documents,…

Process model extraction (PME) is a recently emerged interdiscipline between natural language processing (NLP) and business process management (BPM), which aims to extract process models from textual descriptions. Previous process…

Computation and Language · Computer Science 2020-03-23 Chen Qian , Lijie Wen , Akhil Kumar , Leilei Lin , Li Lin , Zan Zong , Shuang Li , Jianmin Wang

Learning continually from non-stationary data streams is a challenging research topic of growing popularity in the last few years. Being able to learn, adapt, and generalize continually in an efficient, effective, and scalable way is…

Machine Learning · Computer Science 2021-12-14 Antonio Carta , Andrea Cossu , Vincenzo Lomonaco , Davide Bacciu

Chemists in search of structure-property relationships face great challenges due to limited high quality, concordant datasets. Machine learning (ML) has significantly advanced predictive capabilities in chemical sciences, but these modern…

Machine Learning · Computer Science 2025-09-18 Yulia Pimonova , Michael G. Taylor , Alice Allen , Ping Yang , Nicholas Lubbers

Recent work has made significant progress in helping users to automate single data preparation steps, such as string-transformations and table-manipulation operators (e.g., Join, GroupBy, Pivot, etc.). We in this work propose to automate…

Databases · Computer Science 2021-08-05 Junwen Yang , Yeye He , Surajit Chaudhuri