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We consider the problem of metastability for stochastic reversible dynamics with exponentially small transition probabilities. We generalize previous results in several directions. We give an estimate of the spectral gap of the transition…

Probability · Mathematics 2020-07-17 Gianmarco Bet , Vanessa Jacquier , Francesca R. Nardi

This paper presents an algorithm for approximating certain types of dynamical systems given by a system of ordinary delay differential equations by a Boolean network model. Often Boolean models are much simpler to understand than complex…

Molecular Networks · Quantitative Biology 2011-05-10 Franziska Hinkelmann , Reinhard Laubenbacher

This paper introduces a simple formalism for dealing with deterministic, non- deterministic and stochastic cellular automata in an unified and composable manner. This formalism allows for local probabilistic correlations, a feature which is…

Discrete Mathematics · Computer Science 2013-05-20 Pablo Arrighi , Nicolas Schabanel , Guillaume Theyssier

Deterministic many-body systems governed by simple interactions can self-organize into macroscopic patterns, and the determinants of long-time behavior are assumed to be encoded in the initial configuration. Here we show that predictability…

Biological Physics · Physics 2026-04-02 Lars Koopmans , Elinor M. Kay , Hyun Youk

We study charge fluctuations of a family of stochastic charged cellular automata away from the deterministic single-file limit and obtain the exact typical charge probability distributions, known to be anomalous, using hydrodynamics. The…

Statistical Mechanics · Physics 2025-06-06 Takato Yoshimura , Žiga Krajnik

We present a one dimensional reversible block cellular automaton, where the time evolution is dictated by a period 3 cycle of update rules. At each time step a subset of the cells is updated using a four site rule with two control bits and…

Statistical Mechanics · Physics 2021-09-22 Balázs Pozsgay

In complex systems, the interplay between nonlinear and stochastic dynamics, e.g., J. Monod's necessity and chance, gives rise to an evolutionary process in Darwinian sense, in terms of discrete jumps among attractors, with punctuated…

Adaptation and Self-Organizing Systems · Physics 2013-03-18 Hong Qian

Complex coherent dynamics is present in a wide variety of neural systems. A typical example is the voltage transitions between up and down states observed in cortical areas in the brain. In this work, we study this phenomenon via a…

Neurons and Cognition · Quantitative Biology 2015-05-19 Jorge F. Mejias , Hilbert J. Kappen , Joaquin J. Torres

In this paper we study the space evolution in the Rule 54 reversible cellular automaton, which is a paradigmatic example of a deterministic interacting lattice gas. We show that the spatial translation of time configurations of the…

Statistical Mechanics · Physics 2020-08-20 Katja Klobas , Tomaž Prosen

We propose that the behaviour of non-linear media can be controlled automatically through coevolutionary systems. By extension, forms of unconventional computing, i.e., massively parallel non-linear computers, can be realised by such an…

Emerging Technologies · Computer Science 2012-12-13 Christopher Stone , Rita Toth , Ben de Lacy Costello , Larry Bull , Andrew Adamatzky

We study molecular dynamics within populations of diffusively coupled cells under the assumption of fast diffusive exchange. As a technical tool, we propose conditions on boundedness and ultimate boundedness for systems with a singular…

Cell Behavior · Quantitative Biology 2012-12-19 Steffen Waldherr , Frank Allgöwer

The problem of metastability for a stochastic dynamics with a parallel updating rule is addressed in the Freidlin--Wentzel regime, namely, finite volume, small magnetic field, and small temperature. The model is characterized by the…

Statistical Mechanics · Physics 2015-05-13 Emilio N. M. Cirillo , Cristian Spitoni , Francesca R. Nardi

A perturbation framework is developed to analyze metastable behavior in stochastic processes with random internal and external states. The process is assumed to be under weak noise conditions, and the case where the deterministic limit is…

Analysis of PDEs · Mathematics 2013-09-23 Jay Newby , Jon Chapman

We review the mathematical formalism underlying the modelling of stochasticity in biological systems. Beginning with a description of the system in terms of its basic constituents, we derive the mesoscopic equations governing the dynamics…

Populations and Evolution · Quantitative Biology 2012-11-05 Alan J. McKane , Tommaso Biancalani , Tim Rogers

We present a stochastic approach to modeling the dynamics of coexistence of prey and predator populations. It is assumed that the space of coexistence is explicitly subdivided in a grid of cells. Each cell can be occupied by only one…

Populations and Evolution · Quantitative Biology 2015-06-26 Kelly C. de Carvalho , Tania Tome

We propose a new non-equilibrium model for spatial pattern formation on the basis of local information transfer. Unlike standard models of pattern formation it is not based on the Turing instability. Information is transmitted through the…

Statistical Mechanics · Physics 2007-05-23 Thimo Rohlf , Stefan Bornholdt

Cellular automata represent physical systems where both space and time are discrete, and the associated physical quantities assume a limited set of values. While previous research has applied cellular automata in modeling chemical,…

Cellular Automata and Lattice Gases · Physics 2024-10-30 Temitayo Adefemi

We study a probabilistic cellular automaton to describe two population biology problems: the threshold of species coexistence in a predator-prey system and the spreading of an epidemic in a population. By carrying out time-dependent…

Statistical Mechanics · Physics 2015-06-25 Everaldo Arashiro , Tania Tome

Motivated by questions in biology and distributed computing, we investigate the behaviour of particular cellular automata, modelled as one-dimensional arrays of identical finite automata. We investigate what sort of self-stabilising…

Formal Languages and Automata Theory · Computer Science 2009-11-14 Alan Gibbons , Martyn Amos

Based on a non-equilibrium mechanism for spatial pattern formation we study how position information can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of cells in a developing…

Molecular Networks · Quantitative Biology 2009-08-26 Thimo Rohlf , Stefan Bornholdt