Related papers: Frechet-Like Distances between Two Merge Trees
The Fr\'echet distance provides a natural and intuitive measure for the popular task of computing the similarity of two (polygonal) curves. While a simple algorithm computes it in near-quadratic time, a strongly subquadratic algorithm…
The log-det distance between two aligned DNA sequences was introduced as a tool for statistically consistent inference of a gene tree under simple non-mixture models of sequence evolution. Here we prove that the log-det distance, coupled…
For $d\ge 2$ and an odd prime power $q$, consider the vector space $\mathbb{F}_q^d$ over the finite field $\mathbb{F}_q$, where the distance between two points $(x_1,\ldots,x_d)$ and $(y_1,\ldots,y_d)$ is defined as $\sum_{i=1}^d…
The minimal number of rooted subtree prune and regraft (rSPR) operations needed to transform one phylogenetic tree into another one induces a metric on phylogenetic trees - the rSPR-distance. The rSPR-distance between two phylogenetic trees…
This paper introduces a novel stability measure for edit distances between merge trees of piecewise linear scalar fields. We apply the new measure to various metrics introduced recently in the field of scalar field comparison in scientific…
The early development of a zygote can be mathematically described by a developmental tree. To compare developmental trees of different species, we need to define distances on trees. If children cells after a division are not…
The article analyzes similarity of closed polygonal curves with respect to the Frechet metric, which is stronger than the well-known Hausdorff metric and therefore is more appropriate in some applications. An algorithm is described that…
The presence of reticulate evolutionary events in phylogenies turn phylogenetic trees into phylogenetic networks. These events imply in particular that there may exist multiple evolutionary paths from a non-extant species to an extant one,…
The Fr\'{e}chet distance is a well-studied similarity measure between curves that is widely used throughout computer science. Motivated by applications where curves stem from paths and walks on an underlying graph (such as a road network),…
Within the field of phylogenetics there is great interest in distance measures to quantify the dissimilarity of two trees. Here, based on an idea of Bruen and Bryant, we propose and analyze a new distance measure: the Maximum Parsimony (MP)…
Many popular algorithms for searching the space of leaf-labelled trees are based on tree rearrangement operations. Under any such operation, the problem is reduced to searching a graph where vertices are trees and (undirected) edges are…
We present simple and practical $(1+\eps)$-approximation algorithm for the Frechet distance between curves. To analyze this algorithm we introduce a new realistic family of curves, $c$-packed curves, that is closed under simplification. We…
The advances of modern localization techniques and the wide spread of mobile devices have provided us great opportunities to collect and mine human mobility trajectories. In this work, we focus on passively collected trajectories, which are…
The Fr\'echet distance is a popular metric for curves; however, its bottleneck character is a disadvantage in many applications. Here we introduce two variants of the Fr\'echet distance to cope with this problem and expand the work on…
A vertex subset of a graph is called a distance-$k$ independent set if the distance between any two of its distinct vertices is at least $k + 1$. For all $n,k \geq 1$, we determine the minimum possible number of inclusion-wise maximal…
In this paper, we present a flexible and probabilistic framework for tracking topological features in time-varying scalar fields using merge trees and partial optimal transport. Merge trees are topological descriptors that record the…
Consider the natural question of how to measure the similarity of curves in the plane by a quantity that is invariant under translations of the curves. Such a measure is justified whenever we aim to quantify the similarity of the curves'…
Tree comparison metrics have proven to be an invaluable aide in the reconstruction and analysis of phylogenetic (evolutionary) trees. The path-length distance between trees is a particularly attractive measure as it reflects differences in…
A directed graph, called an M-graph, is attached to every melody. Our chief concern in this paper is to investigate (1) how the positivity of the slope of the M-graph is related to singability of the melody, (2) when the M-graph has a…
The Fr\'echet distance is a distance measure between trajectories in $\Bbb{R}^d$ or walks in a graph $G$. Given constant-time shortest path queries, the Discrete Fr\'echet distance $D_G(P, Q)$ between two walks $P$ and $Q$ can be computed…