English
Related papers

Related papers: ivis Dimensionality Reduction Framework for Biomac…

200 papers

We present a novel, domain-agnostic, model-independent, unsupervised, and universally applicable Machine Learning approach for dimensionality reduction based on the principles of algorithmic complexity. Specifically, but without loss of…

Data Structures and Algorithms · Computer Science 2025-05-06 Hector Zenil , Narsis A. Kiani , Alyssa Adams , Felipe S. Abrahão , Antonio Rueda-Toicen , Allan A. Zea , Luan Ozelim , Jesper Tegnér

Deep learning has been widely used for solving image reconstruction tasks but its deployability has been held back due to the shortage of high-quality training data. Unsupervised learning methods, such as the deep image prior (DIP),…

Computer Vision and Pattern Recognition · Computer Science 2023-06-06 Riccardo Barbano , Javier Antorán , Johannes Leuschner , José Miguel Hernández-Lobato , Bangti Jin , Željko Kereta

Deep learning based Image Super-Resolution (ISR) relies on large training datasets to optimize model generalization; this requires substantial computational and storage resources during training. While dataset condensation (DC) has shown…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Tianhao Peng , Ho Man Kwan , Yuxuan Jiang , Ge Gao , Fan Zhang , Xiaozhong Xu , Shan Liu , David Bull

Proteins are the fundamental macromolecules that play diverse and crucial roles in all living matter and have tremendous implications in healthcare, manufacturing, and biotechnology. Their functions are largely determined by the sequences…

Biomolecules · Quantitative Biology 2024-09-17 Boqiao Lai

The accurate screening of candidate drug ligands against target proteins through computational approaches is of prime interest to drug development efforts. Such virtual screening depends in part on methods to predict the binding affinity…

Machine Learning · Computer Science 2024-10-22 Ho-Joon Lee , Prashant S. Emani , Mark B. Gerstein

Deep learning methods have recently made notable advances in the tasks of classification and representation learning. These tasks are important for brain imaging and neuroscience discovery, making the methods attractive for porting to a…

Neural and Evolutionary Computing · Computer Science 2014-02-20 Sergey M. Plis , Devon R. Hjelm , Ruslan Salakhutdinov , Vince D. Calhoun

The increasing number of protein-based metamaterials demands reliable and efficient theoretical and computational methods to study the physicochemical properties they may display. In this regard, we develop a simulation strategy based on…

Soft Condensed Matter · Physics 2020-06-23 J. A. Campos Gonzalez Angulo , G. Wiesehan , R. F. Ribeiro , J. Yuen-Zhou

Masked Image Modeling (MIM) achieves outstanding success in self-supervised representation learning. Unfortunately, MIM models typically have huge computational burden and slow learning process, which is an inevitable obstacle for their…

Computer Vision and Pattern Recognition · Computer Science 2023-03-10 Haoqing Wang , Yehui Tang , Yunhe Wang , Jianyuan Guo , Zhi-Hong Deng , Kai Han

High-dimensional multimodal data arises in many scientific fields. The integration of multimodal data becomes challenging when there is no known correspondence between the samples and the features of different datasets. To tackle this…

Quantitative Methods · Quantitative Biology 2023-04-11 Kathryn Dover , Zixuan Cang , Anna Ma , Qing Nie , Roman Vershynin

Multidimensional Scaling (MDS) is one of the most popular methods for dimensionality reduction and visualization of high dimensional data. Apart from these tasks, it also found applications in the field of geometry processing for the…

Computational Geometry · Computer Science 2017-09-12 Amit Boyarski , Alex M. Bronstein , Michael M. Bronstein

Image Compression for Machines (ICM) aims to compress images for machine vision tasks rather than human viewing. Current works predominantly concentrate on high-level tasks like object detection and semantic segmentation. However, the…

Computer Vision and Pattern Recognition · Computer Science 2024-12-06 Yuan Xue , Qi Zhang , Chuanmin Jia , Shiqi Wang

Labeling pixel-wise object masks in videos is a resource-intensive and laborious process. Box-supervised Video Instance Segmentation (VIS) methods have emerged as a viable solution to mitigate the labor-intensive annotation process. . In…

Computer Vision and Pattern Recognition · Computer Science 2024-04-23 Zhangjing Yang , Dun Liu , Wensheng Cheng , Jinqiao Wang , Yi Wu

Dimensionality reduction plays an important role in computer vision problems since it reduces computational cost and is often capable of yielding more discriminative data representation. In this context, Partial Least Squares (PLS) has…

Computer Vision and Pattern Recognition · Computer Science 2020-11-11 Artur Jordao , Maiko Lie , Victor Hugo Cunha de Melo , William Robson Schwartz

The performance of machine learning based network intrusion detection systems (NIDSs) severely degrades when deployed on a network with significantly different feature distributions from the ones of the training dataset. In various…

Cryptography and Security · Computer Science 2023-05-15 Siamak Layeghy , Mahsa Baktashmotlagh , Marius Portmann

Dimensionality reduction is the essence of many data processing problems, including filtering, data compression, reduced-order modeling and pattern analysis. While traditionally tackled using linear tools in the fluid dynamics community,…

Fluid Dynamics · Physics 2023-02-01 Miguel A. Mendez

Mass Spectrometry Imaging (MSI), using traditional rectilinear scanning, takes hours to days for high spatial resolution acquisitions. Given that most pixels within a sample's field of view are often neither relevant to underlying…

Image and Video Processing · Electrical Eng. & Systems 2022-10-25 David Helminiak , Hang Hu , Julia Laskin , Dong Hye Ye

Large scale dynamical systems (e.g. many nonlinear coupled differential equations) can often be summarized in terms of only a few state variables (a few equations), a trait that reduces complexity and facilitates exploration of behavioral…

Deep-learning-based methods for different applications have been shown vulnerable to adversarial examples. These examples make deployment of such models in safety-critical tasks questionable. Use of deep neural networks as inverse problem…

Machine Learning · Computer Science 2020-02-28 Ankit Raj , Yoram Bresler , Bo Li

We consider the task of predicting a response Y from a set of covariates X in settings where the conditional distribution of Y given X changes over time. For this to be feasible, assumptions on how the conditional distribution changes over…

Machine Learning · Statistics 2025-02-19 Margherita Lazzaretto , Jonas Peters , Niklas Pfister

With the recent surge in big data analytics for hyper-dimensional data there is a renewed interest in dimensionality reduction techniques for machine learning applications. In order for these methods to improve performance gains and…

Machine Learning · Computer Science 2023-01-20 J. Derek Tucker , Matthew T. Martinez , Jose M. Laborde