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mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello

Multimodal medical information processing is currently the epicenter of intense interdisciplinary research, as proper data fusion may lead to more accurate diagnoses. Moreover, multimodality may disambiguate cases of co-morbidity. This…

Information Retrieval · Computer Science 2017-02-23 Georgios Drakopoulos , Vasileios Megalooikonomou

Reproducibility of research is essential for science. However, in the way modern computational biology research is done, it is easy to lose track of small, but extremely critical, details. Key details, such as the specific version of a…

Progress in a research field can be hard to assess, in particular when many concurrent methods are proposed in a short period of time. This is the case in digital pathology, where many foundation models have been released recently to serve…

Computer Vision and Pattern Recognition · Computer Science 2026-02-18 Pierre Marza , Leo Fillioux , Sofiène Boutaj , Kunal Mahatha , Christian Desrosiers , Pablo Piantanida , Jose Dolz , Stergios Christodoulidis , Maria Vakalopoulou

Mutation testing may be used to guide test case generation and as a technique to assess the quality of test suites. Despite being used frequently, mutation testing is not so commonly applied in the mobile world. One critical challenge in…

In this work, we investigate improving the runtime performance of key computational kernels in the Python Tensor Toolbox (pyttb), a package for analyzing tensor data across a wide variety of applications. Recent runtime performance…

Mathematical Software · Computer Science 2025-10-03 Kimmie Harding , Daniel M. Dunlavy

Python is one of the fastest-growing programming languages and currently ranks as the top language in many lists, even recently overtaking JavaScript as the top language on GitHub. Given its importance in data science and machine learning,…

Software Engineering · Computer Science 2025-02-10 Idriss Abdelmadjid , Robert Dyer

Direct Numerical Simulations (DNS) of the Navier Stokes equations is an invaluable research tool in fluid dynamics. Still, there are few publicly available research codes and, due to the heavy number crunching implied, available codes are…

Mathematical Software · Computer Science 2016-05-04 Mikael Mortensen , Hans Petter Langtangen

Previous research has demonstrated the advantages of integrating data from multiple sources over traditional unimodal data, leading to the emergence of numerous novel multimodal applications. We propose a multimodal classification benchmark…

Machine Learning · Computer Science 2023-12-20 Jiaying Lu , Yongchen Qian , Shifan Zhao , Yuanzhe Xi , Carl Yang

An in-house developed 2D ultrasound computerized Tomography system is fully automated. Performance analysis of instrument and software interfacing soft tools, namely the LabVIEW, MATLAB, C, and Python, is presented. The instrument…

Programming Languages · Computer Science 2023-11-01 Ankur Kumar , Mayank Goswami

Processing-using-DRAM (PUD) is a processing-in-memory (PIM) approach that uses a DRAM array's massive internal parallelism to execute very-wide data-parallel operations, in a single-instruction multiple-data (SIMD) fashion. However, DRAM…

Artificial Intelligence (AI) has emerged in popularity recently, recording great progress in various industries. However, the environmental impact of AI is a growing concern, in terms of the energy consumption and carbon footprint of…

Cryptography and Security · Computer Science 2024-11-14 Pedro Pereira , Paulo Mendes , João Vitorino , Eva Maia , Isabel Praça

The paper is devoted to the issues of raw binary data documenting, parsing and verifying in astroparticle data lifecycle. The long-term preservation of raw data of astroparticle experiments as originally generated is essential for…

Yamdb (Yet another materials data base) addresses the need to provide thermophysical properties of liquid metals and molten salts in an easily accessible manner. Mathematical relations describing material properties - usually determined by…

Materials Science · Physics 2024-02-20 Tom Weier , William Nash , Paolo Personnettaz , Norbert Weber

We introduce a new open-source Python x-ray tracing code for modelling Bragg diffracting mosaic crystal spectrometers: High Energy Applications Ray Tracer (HEART). HEART's high modularity enables customizable workflows as well as efficient…

This paper introduces THUMT, an open-source toolkit for neural machine translation (NMT) developed by the Natural Language Processing Group at Tsinghua University. THUMT implements the standard attention-based encoder-decoder framework on…

Computation and Language · Computer Science 2017-06-21 Jiacheng Zhang , Yanzhuo Ding , Shiqi Shen , Yong Cheng , Maosong Sun , Huanbo Luan , Yang Liu

A common requirement in science is to store and share large sets of simulation data in an efficient, nested, flexible and human-readable way. Such datasets contain number counts and distributions, i.e. histograms and maps, of arbitrary…

Data Structures and Algorithms · Computer Science 2024-01-26 Robert G. Izzard , David D. Hendriks , Daniel P. Nemergut

"Harden" is a Progressive Web Application (PWA) for Ecological Momentary Assessment (EMA) developed mostly in R, which runs on all platforms with an internet connection, including iOS and Android. It leverages the shinyMobile package for…

Software Engineering · Computer Science 2024-09-04 Nathan Henry

IoT devices are increasingly being implicated in cyber-attacks, driving community concern about the risks they pose to critical infrastructure, corporations, and citizens. In order to reduce this risk, the IETF is pushing IoT vendors to…

Cryptography and Security · Computer Science 2023-01-19 Ayyoob Hamza , Dinesha Ranathunga , H. Habibi Gharakheili , Matthew Roughan , Vijay Sivaraman

TauREx 3 is the next generation of the TauREx exoplanet atmospheric retrieval framework for Windows, Mac, and Linux. It is a complete rewrite with a full Python stack that makes it easy-to-use, high-performance, dynamic, and flexible. The…

Instrumentation and Methods for Astrophysics · Physics 2021-08-19 Ahmed F. Al-Refaie , Quentin Changeat , Ingo P. Waldmann , Giovanna Tinetti