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The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…

Data Structures and Algorithms · Computer Science 2016-08-23 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

In this paper, we study arbitrary subword-closed languages over the alphabet $\{0,1\}$ (binary subword-closed languages). For the set of words $L(n)$ of the length $n$ belonging to a binary subword-closed language $L$, we investigate the…

Formal Languages and Automata Theory · Computer Science 2023-03-22 Mikhail Moshkov

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

Hyperedge-Replacement grammars (HR) have been introduced by Courcelle in order to extend the notion of context-free sets from words and trees to graphs of bounded tree-width. While for words and trees the syntactic restrictions that…

Formal Languages and Automata Theory · Computer Science 2024-02-29 Mark Chimes , Radu Iosif , Florian Zuleger

The grammar representation of a narrowing tree for a syntactically deterministic conditional term rewriting system and a pair of terms is a regular tree grammar that generates expressions for substitutions obtained by all possible…

Logic in Computer Science · Computer Science 2019-02-25 Naoki Nishida , Yuya Maeda

In this paper we show that the following problem is NP-complete: Given an alphabet $\Sigma$ and two strings over $\Sigma$, the question is whether there exists a permutation of $\Sigma$ which is a subsequence of both of the given strings.

Computational Complexity · Computer Science 2008-04-01 Marián Dvorský

Let $\mathcal{P}(\Sigma^*)$ be the semiring of languages, and consider its subset $\mathcal{P}(\Sigma)$. In this paper we define the language recognized by a weighted automaton over $\mathcal{P}(\Sigma)$ and a one-letter alphabet.…

Formal Languages and Automata Theory · Computer Science 2010-07-27 Edoardo Carta-Gerardino , Parisa Babaali

Patterns are words with terminals and variables. The language of a pattern is the set of words obtained by uniformly substituting all variables with words that contain only terminals. Regular constraints restrict valid substitutions of…

Formal Languages and Automata Theory · Computer Science 2024-11-13 Dirk Nowotka , Max Wiedenhöft

Mathematical modeling is a standard approach to solve many real-world problems and {\em diversity} of solutions is an important issue, emerging in applying solutions obtained from mathematical models to real-world problems. Many studies…

Data Structures and Algorithms · Computer Science 2020-12-15 Tesshu Hanaka , Yasuaki Kobayashi , Kazuhiro Kurita , Yota Otachi

Given two rooted, labeled trees $P$ and $T$ the tree path subsequence problem is to determine which paths in $P$ are subsequences of which paths in $T$. Here a path begins at the root and ends at a leaf. In this paper we propose this…

Data Structures and Algorithms · Computer Science 2011-11-09 Philip Bille , Inge Li Goertz

The largest common embeddable subtree problem asks for the largest possible tree embeddable into two input trees and generalizes the classical maximum common subtree problem. Several variants of the problem in labeled and unlabeled rooted…

Data Structures and Algorithms · Computer Science 2018-05-03 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

The Int_reg-problem of a combinatorial problem P asks, given a nondeterministic automaton M as input, whether the language L(M) accepted by M contains any positive instance of the problem P. We consider the Int_reg-problem for a number of…

Formal Languages and Automata Theory · Computer Science 2020-03-13 Petra Wolf , Henning Fernau

We consider symbolic tree automata (sta) and symbolic tree transducers (stt). We characterize s-recognizable tree languages (which are the tree languages recognizable by sta) in terms of (classical) recognizable tree languages and…

Formal Languages and Automata Theory · Computer Science 2012-08-28 Zoltán Fülöp , Heiko Vogler

A tower between two regular languages is a sequence of strings such that all strings on odd positions belong to one of the languages, all strings on even positions belong to the other language, and each string can be embedded into the next…

Formal Languages and Automata Theory · Computer Science 2014-07-10 Štěpán Holub , Galina Jirásková , Tomáš Masopust

e use Prolog as a flexible meta-language to provide executable specifications of some fundamental mathematical objects and their transformations. In the process, isomorphisms are unraveled between natural numbers and combinatorial objects…

Programming Languages · Computer Science 2011-12-19 Paul Tarau

A language $L$ over an alphabet $\Sigma$ is prefix-convex if, for any words $x,y,z\in\Sigma^*$, whenever $x$ and $xyz$ are in $L$, then so is $xy$. Prefix-convex languages include right-ideal, prefix-closed, and prefix-free languages. We…

Formal Languages and Automata Theory · Computer Science 2016-06-27 Janusz Brzozowski , Corwin Sinnamon

This paper provides a geometric characterization of subclasses of the regular languages. We use finite model theory to characterize objects like strings and trees as relational structures. Logical statements meeting certain criteria over…

Formal Languages and Automata Theory · Computer Science 2019-08-23 Jonathan Rawski

We consider the problem of computing the measure of a regular language of infinite binary trees. While the general case remains unsolved, we show that the measure of a language defined by a first-order formula with no descendant relation or…

Logic in Computer Science · Computer Science 2018-09-11 Marcin Przybyłko

A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] \cdots w[i_k]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq \vert w \vert$. A word $w$ is \emph{$k$-subsequence universal} over an alphabet $\Sigma$ if…

Formal Languages and Automata Theory · Computer Science 2025-03-25 Duncan Adamson , Pamela Fleischmann , Annika Huch , Tore Koß , Florin Manea

Regular word grammars are restricted context-free grammars that define all the recognizable languages of words. This paper generalizes regular grammars from words to certain classes of graphs, by defining regular grammars for unordered…

Formal Languages and Automata Theory · Computer Science 2025-06-17 Marius Bozga , Radu Iosif , Florian Zuleger