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Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR), linked with CRISPR associated (CAS) genes, play a profound role in the interactions between phage and their bacterial hosts. It is now well understood that CRISPR-CAS…

Populations and Evolution · Quantitative Biology 2016-03-18 Qasim Ali , Lindi Wahl

Point-cloud registration (PCR) is an important task in various applications such as robotic manipulation, augmented and virtual reality, SLAM, etc. PCR is an optimization problem involving minimization over two different types of…

Computer Vision and Pattern Recognition · Computer Science 2020-12-07 Tejas Zodage , Rahul Chakwate , Vinit Sarode , Rangaprasad Arun Srivatsan , Howie Choset

Prediction of one-dimensional protein structures such as secondary structures and contact numbers is useful for the three-dimensional structure prediction and important for the understanding of sequence-structure relationship. Here we…

Biomolecules · Quantitative Biology 2007-05-23 Akira R. Kinjo , Ken Nishikawa

CRISPR-based diagnostics have gained increasing attention as biosensing tools able to address limitations in contemporary molecular diagnostic tests. To maximise the performance of CRISPR-based assays, much effort has focused on optimizing…

Quantitative Methods · Quantitative Biology 2025-01-09 Nathan Khosla , Jake M. Lesinski , Marcus Haywood-Alexander , Andrew J. deMello , Daniel A. Richards

Discriminative deep learning approaches have shown impressive results for problems where human-labeled ground truth is plentiful, but what about tasks where labels are difficult or impossible to obtain? This paper tackles one such problem:…

Computer Vision and Pattern Recognition · Computer Science 2016-04-20 Tinghui Zhou , Philipp Krähenbühl , Mathieu Aubry , Qixing Huang , Alexei A. Efros

Models of physical systems are used to explain and predict experimental results and observations. When students encounter discrepancies between the actual and expected behavior of a system, they revise their models to include the newly…

Physics Education · Physics 2022-07-06 Laura Ríos , Benjamin Pollard , Dimitri R. Dounas-Frazer , H. J. Lewandowski

In tracking radar, the sensing environment often varies significantly over a track duration due to the target's trajectory and dynamic interference. Adapting the radar's waveform using partial information about the state of the scene has…

Information Theory · Computer Science 2021-08-04 Charles E. Thornton , R. Michael Buehrer , Anthony F. Martone

Performing machine learning with analog signals offers advantages in speed and energy efficiency, but sensitivity to component and measurement imperfections often foils training without a system-specific companion digital model. Here we…

Disordered Systems and Neural Networks · Physics 2026-03-18 Sam Dillavou , Marcelo Guzman , Andrea J. Liu , Douglas J. Durian

The possible application of boosted neural network to particle classification in high energy physics is discussed. A two-dimensional toy model, where the boundary between signal and background is irregular but not overlapping, is…

High Energy Physics - Phenomenology · Physics 2007-05-23 Yu Meiling , Xu Mingmei , Liu Lianshou

Prediction of protein structures using computational approaches has been explored for over two decades, paving a way for more focused research and development of algorithms in comparative modelling, ab intio modelling and structure…

Quantitative Methods · Quantitative Biology 2020-05-19 Surbhi Dhingra , Ramanathan Sowdhamini , Frédéric Cadet , Bernard Offmann

Cross-lingual Machine Reading Comprehension (xMRC) is challenging due to the lack of training data in low-resource languages. The recent approaches use training data only in a resource-rich language like English to fine-tune large-scale…

Machine Learning · Computer Science 2021-12-10 Nuo Chen , Linjun Shou , Min Gong , Jian Pei , Daxin Jiang

Biometrics systems have significantly improved person identification and authentication, playing an important role in personal, national, and global security. However, these systems might be deceived (or "spoofed") and, despite the recent…

Computer Vision and Pattern Recognition · Computer Science 2016-11-17 David Menotti , Giovani Chiachia , Allan Pinto , William Robson Schwartz , Helio Pedrini , Alexandre Xavier Falcao , Anderson Rocha

Decision support systems are essential for maintaining grid stability in low-carbon power systems, such as wind power plants, by providing real-time alerts to control room operators regarding potential events, including Wind Power Ramp…

Few-Shot Event Classification (FSEC) aims at developing a model for event prediction, which can generalize to new event types with a limited number of annotated data. Existing FSEC studies have achieved high accuracy on different…

Computation and Language · Computer Science 2021-08-31 Peiyi Wang , Runxin Xu , Tianyu Liu , Damai Dai , Baobao Chang , Zhifang Sui

Machine-learning models are increasingly driving decisions in high-stakes settings, such as finance, law, and hiring, thus, highlighting the need for transparency. However, the key challenge is to balance transparency -- clarifying `why' a…

Artificial Intelligence · Computer Science 2025-08-29 Sopam Dasgupta , Sadaf MD Halim , Joaquín Arias , Elmer Salazar , Gopal Gupta

The diagnosis of cyber-physical systems aims to detect faulty behaviour, its root cause and a mitigation or even prevention policy. Therefore, diagnosis relies on a representation of the system's functional and faulty behaviour combined…

Machine Learning · Computer Science 2021-10-13 Nicolas Olivain , Philipp Tiefenbacher , Jens Kohl

Motivation: Sparse autoencoders (SAEs) decompose foundation model activations into interpretable features, but causal feature-to-feature interactions across network depth remain unknown for biological foundation models. Results: We…

Machine Learning · Computer Science 2026-03-05 Ihor Kendiukhov

Finding general evaluation metrics for unsupervised representation learning techniques is a challenging open research question, which recently has become more and more necessary due to the increasing interest in unsupervised methods. Even…

Computer Vision and Pattern Recognition · Computer Science 2022-03-02 Bonifaz Stuhr , Jürgen Brauer

Machine Learning models increasingly face data integrity challenges due to the use of large-scale training datasets drawn from the Internet. We study what model developers can do if they detect that some data was manipulated or incorrect.…

Machine Learning · Computer Science 2024-10-18 Shashwat Goel , Ameya Prabhu , Philip Torr , Ponnurangam Kumaraguru , Amartya Sanyal

From a stability perspective, a renewable generation (RG)-rich power system is a constrained system. As the quasistability boundary of a constrained system is structurally very different from that of an unconstrained system, finding the…

Systems and Control · Computer Science 2020-02-05 Chetan Mishra , Anamitra Pal , Virgilio A. Centeno