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In a variety of applications, we need to keep track of the development of a data set over time. For maintaining and querying this multi version data I/O-efficiently, external memory data structures are required. In this paper, we present a…
Bit-serial computation facilitates bit-wise sequential data processing, offering numerous benefits, such as a reduced area footprint and dynamically-adaptive computational precision. It has emerged as a prominent approach, particularly in…
Structure Learning for Bayesian network (BN) is an important problem with extensive research. It plays central roles in a wide variety of applications in Alibaba Group. However, existing structure learning algorithms suffer from…
We investigate the limits of one of the fundamental ideas in data structures: fractional cascading. This is an important data structure technique to speed up repeated searches for the same key in multiple lists and it has numerous…
While short read aligners, which predominantly use the FM-index, are able to easily index one or a few human genomes, they do not scale well to indexing databases containing thousands of genomes. To understand why, it helps to examine the…
We propose new succinct representations of ordinal trees, which have been studied extensively. It is known that any $n$-node static tree can be represented in $2n + o(n)$ bits and a number of operations on the tree can be supported in…
We develop dynamic data structures for maintaining a hierarchical k-center clustering when the points come from a discrete space $\{1,\ldots,\Delta\}^d$. Our first data structure is for the low dimensional setting, i.e., d is a constant,…
The Burrows-Wheeler Transform is a string transformation that plays a fundamental role for the design of self-indexing compressed data structures. Over the years, researchers have successfully extended this transformation outside the…
In a variational denoising model, weight in the data fidelity term plays the role of enhancing the noise-removal capability. It is profoundly correlated with noise information, while also balancing the data fidelity and regularization…
Uniquely represented data structures represent each logical state with a unique storage state. We study the problem of maintaining a dynamic set of $n$ keys from a totally ordered universe in this context. We introduce a two-layer data…
The Burrows-Wheeler transform (BWT) is a permutation whose applications are prevalent in data compression and text indexing. The bijective BWT (BBWT) is a bijective variant of it. Although it is known that the BWT can be constructed in…
Enumeration algorithms have been one of recent hot topics in theoretical computer science. Different from other problems, enumeration has many interesting aspects, such as the computation time can be shorter than the total output size, by…
We show how to build several data structures of central importance to string processing, taking as input the Burrows-Wheeler transform (BWT) and using small extra working space. Let $n$ be the text length and $\sigma$ be the alphabet size.…
An oblivious data structure is a data structure where the memory access patterns reveals no information about the operations performed on it. Such data structures were introduced by Wang et al. [ACM SIGSAC'14] and are intended for…
The wide proliferation of various wireless communication systems and wireless devices has led to the arrival of big data era in large scale wireless networks. Big data of large scale wireless networks has the key features of wide variety,…
For a set $P$ of $n$ points in the plane and a value $r > 0$, the unit-disk range reporting problem is to construct a data structure so that given any query disk of radius $r$, all points of $P$ in the disk can be reported efficiently. We…
Summary: Longer sequencing reads, with at least 200 bases per template are now common. While traditional aligners have adopted new strategies to improve the mapping of longer reads, aligners specific to bisulfite-sequencing were optimized…
Wearable human activity recognition (WHAR) models often suffer from performance degradation under real-world cross-user distribution shifts. Test-time adaptation (TTA) mitigates this degradation by adapting models online using unlabeled…
Weighted automata (WA) are an extension of finite automata that define functions from words to values in a given semiring. An alternative deterministic model, called Cost Register Automata (CRA), was introduced by Alur et al. It enriches…
Linear dimensionality reduction methods are commonly used to extract low-dimensional structure from high-dimensional data. However, popular methods disregard temporal structure, rendering them prone to extracting noise rather than…