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Related papers: Microbial Active Matter: A Topological Framework

200 papers

Geometric, topological and graph theory modeling and analysis of biomolecules are of essential importance in the conceptualization of molecular structure, function, dynamics, and transport. On the one hand, geometric modeling provides…

Biomolecules · Quantitative Biology 2016-12-07 Kelin Xia , Guo-Wei Wei

Active materials are capable of converting free energy into directional motion, giving rise to striking dynamical phenomena. Developing a general understanding of their structure in relation to the underlying non-equilibrium physics would…

Soft Condensed Matter · Physics 2018-10-17 Nitin Kumar , Rui Zhang , Juan J. de Pablo , Margaret L. Gardel

Transition out of a topological phase is typically characterized by discontinuous changes in topological invariants along with bulk gap closings. However, as a clean system is geometrically punctured, it is natural to ask the fate of an…

Disordered Systems and Neural Networks · Physics 2023-12-15 Saikat Mondal , Subrata Pachhal , Adhip Agarwala

Many particle physics models of matter admit solutions corresponding to stable or long-lived topological defects. In the context of standard cosmology it is then unavoidable that such defects will form during phase transitions in the very…

High Energy Physics - Phenomenology · Physics 2009-10-31 Robert H. Brandenberger

Active emulsions and liquid crystalline shells are intriguing and experimentally realisable types of topological matter. Here we numerically study the morphology and spatiotemporal dynamics of a double emulsion, where one or two passive…

Recent experimental observations have suggested that topological defects can facilitate the creation of sharp features in developing embryos. Whereas these observations echo established knowledge about the interplay between geometry and…

Soft Condensed Matter · Physics 2023-07-25 Ludwig A. Hoffmann , Livio Nicola Carenza , Luca Giomi

Active colloidal particles provide versatile model systems for exploring non-equilibrium physics in motile matter. To date, most experimental realizations have focused on spherical particles, largely due to fabrication constraints. However,…

Soft Condensed Matter · Physics 2026-04-10 Mengshi Wei , Daniela J. Kraft

Rigidity is an emergent property of materials - it is not a feature of individual components that comprise the structure, but instead arises from interactions between many constituent parts. Recently, it has been recognized that…

Soft Condensed Matter · Physics 2025-08-27 Kelly Aspinwall , Tyler Hain , M. Lisa Manning

Symmetry-breaking phase transitions are ubiquitous in condensed matter systems and in quantum field theories. There is also good reason to believe that they feature in the very early history of the Universe. At many such transitions…

Condensed Matter · Physics 2007-05-23 T. W. B. Kibble

Morphological trends in growing colonies of living cells are at the core of physiological and evolutionary processes. Using active gel equations, which include cell division, we show that shape changes during the growth can be regulated by…

Soft Condensed Matter · Physics 2016-07-27 Amin Doostmohammadi , Sumesh P. Thampi , Julia M. Yeomans

There has been increasing experimental evidence of non-affine elastic deformation mechanisms in biological soft tissues. These observations call for novel constitutive models which are able to describe the dominant underlying…

Computational Physics · Physics 2021-03-04 Sebastian Skatulla , Carlo Sansour , Georges Limbert

An introduction to topological defects in cosmology is given. We discuss their possible relevance for structure formation. Especial emphasis is given on the signature of topological defects in the spectrum of anisotropies in the cosmic…

Astrophysics · Physics 2007-05-23 Ruth Durrer

We consider a perfectly homogeneous, isotropic and spatially flat universe which undergoes a sudden phase transition producing topological defects. We assume that these defects form a coherent network which scales like the background…

Astrophysics · Physics 2007-05-23 Jean-Philippe Uzan , Nathalie Deruelle , Alain Riazuelo

This paper investigates spaces equipped with a family of metric-like functions satisfying certain axioms. These functions provide a unified framework for defining topology, uniformity, and diffeology. The framework is based on a family of…

General Topology · Mathematics 2026-03-25 Masaki Taho

Time-variant systems have recently garnered considerable attention due to their unique potentials in manipulating electromagnetic waves. Here, a novel class of topological spacetime crystals is introduced, with a traveling-wave modulation…

Optics · Physics 2025-09-24 João C. Serra , Mário G. Silveirinha

Active systems are driven out of equilibrium by exchanging energy and momentum with their environment. This endows them with anomalous mechanical properties that we review in this colloquium for the case of dry scalar active matter, which…

Soft Condensed Matter · Physics 2025-01-20 Omer Granek , Yariv Kafri , Mehran Kardar , Sunghan Ro , Alexandre Solon , Julien Tailleur

Many systems in nature and the synthetic world involve ordered arrangements of units on two-dimensional surfaces. We review here the fundamental role payed by both the topology of the underlying surface and its detailed curvature. Topology…

Soft Condensed Matter · Physics 2009-07-31 Mark J. Bowick , Luca Giomi

Using computer simulations we investigate the microscopic structure of the singular director field within a nematic droplet. As a theoretical model for nematic liquid crystals we take hard spherocylinders. To induce an overall topological…

Soft Condensed Matter · Physics 2009-10-31 J. Dzubiella , M. Schmidt , H. Loewen

The interplay of nonlinearity and topology results in many novel and emergent properties across a number of physical systems such as chiral magnets, nematic liquid crystals, Bose-Einstein condensates, photonics, high energy physics, etc. It…

Pattern Formation and Solitons · Physics 2020-08-25 A. Saxena , P. G. Kevrekidis , J. Cuevas-Maraver

Many active systems are capable of forming intriguing patterns at scales significantly larger than the size of their individual constituents. Cyanobacteria are one of the most ancient and important phyla of organisms that has allowed the…

Soft Condensed Matter · Physics 2024-11-28 Jan Cammann , Mixon K. Faluweki , Nayara Dambacher , Lucas Goehring , Marco G. Mazza