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Related papers: COVID-19: $R_0$ is lower where outbreak is larger

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In this paper, we present a model to predict the spread of the Covid-19 epidemic and apply it to the specific case of Italy. We started from a simple Susceptible, Infected, Recovered (SIR) model and we added the condition that, after a…

In this work, the SIR epidemiological model is reformulated so to highlight the important {\em effective reproduction number}, as well as to account for the {\em generation time}, inverse of the {\em incidence rate}, and the {\em infectious…

Populations and Evolution · Quantitative Biology 2021-07-27 Ignazio Lazzizzera

A great issue of discussion of an infectious disease is its basic reproduction number R0, which provides an estimation of the contagiousness of the disease. When R0 > 1, the disease spread will potentially lead to an outbreak, such that of…

Populations and Evolution · Quantitative Biology 2021-01-18 Dimitrios G. Patsatzis

Susceptible-Invective-Recovered (SIR) mathematical models are in high demand due to the COVID-19 pandemic. They are used in their standard formulation, or through the many variants, trying to fit and hopefully predict the number of new…

Populations and Evolution · Quantitative Biology 2020-05-19 Ben-Hur Francisco Cardoso , Sebastián Gonçalves

An epidemic disease caused by a new coronavirus has spread in Northern Italy with a strong contagion rate. We implement an SEIR model to compute the infected population and number of casualties of this epidemic. The example may ideally…

Populations and Evolution · Quantitative Biology 2020-05-12 Jose' M. Carcione , Juan E. Santos , Claudio Bagaini , Jing Ba

In the night of February 20, 2020, the first case of novel coronavirus disease (COVID-19) was confirmed in the Lombardy Region, Italy. In the week that followed, Lombardy experienced a very rapid increase in the number of cases. We analyzed…

Aim of this manuscript is to show a simple method to infer the time-course of new COVID-19 infections (the most important information in order to establish the effect of containment strategies) from available aggregated data, such as number…

Populations and Evolution · Quantitative Biology 2020-04-21 Andrea Pugliese , Sara Sottile

Initially emerged in the Chinese city Wuhan and subsequently spread almost worldwide causing a pandemic, the SARS-CoV-2 virus follows reasonably well the SIR (Susceptible-Infectious-Recovered) epidemic model on contact networks in the…

Physics and Society · Physics 2020-10-28 Clara Pizzuti , Annalisa Socievole , Bastian Prasse , Piet Van Mieghem

In the absence of other tools, monitoring the effects of protective measures, including social distancing and forecasting the outcome of outbreaks is of immense interest. Real-time data is noisy and very often hampered by systematic errors…

Populations and Evolution · Quantitative Biology 2020-08-11 Gabor Vattay

In this study, we use US county-level COVID-19 case data from January 21-March 25, 2020 to study the exponential behavior of case growth at the metropolitan scale. In particular, we assume that all localized outbreaks are in an early stage…

Populations and Evolution · Quantitative Biology 2020-04-07 Samuel Heroy

Background: Northern Italy was one of the most impacted areas by COVID. It is now widely assumed that the virus was silently spreading for at least 2 weeks before the first patient was identified. During this silent phase, and in the…

Populations and Evolution · Quantitative Biology 2020-08-11 Luca Presotto

The presence of a large number of infected individuals with few or no symptoms is an important epidemiological difficulty and the main mathematical feature of COVID-19. The A-SIR model, i.e. a SIR (Susceptible-Infected-Removed) model with a…

Populations and Evolution · Quantitative Biology 2020-08-19 Armando G. M. Neves , Gustavo Guerrero

In this paper we propose a Susceptible-Infected-Exposed-Recovered-Dead (SEIRD) differential model for the analysis and forecast of the COVID-19 spread in some regions of Italy, using the data from the Italian Protezione Civile from February…

Populations and Evolution · Quantitative Biology 2020-03-24 Elena Loli Piccolomini , Fabiana Zama

We propose a novel data-driven framework for assessing the a-priori epidemic risk of a geographical area and for identifying high-risk areas within a country. Our risk index is evaluated as a function of three different components: the…

Physics and Society · Physics 2021-03-16 A. Pluchino , A. E. Biondo , N. Giuffrida , G. Inturri , V. Latora , R. Le Moli , A. Rapisarda , G. Russo , C. Zappala'

We propose a stochastic SIR model, specified as a system of stochastic differential equations, to analyse the data of the Italian COVID-19 epidemic, taking also into account the under-detection of infected and recovered individuals in the…

Populations and Evolution · Quantitative Biology 2021-02-22 Sara Pasquali , Antonio Pievatolo , Antonella Bodini , Fabrizio Ruggeri

The aim of this paper consists in the application of a recent epidemiological model, namely SEIR with Social Distancing (SEIR--SD), extended here through the definition of a social distancing function varying over time, to assess the…

Populations and Evolution · Quantitative Biology 2020-04-07 I. De Falco , A. Della Cioppa , U. Scafuri , E. Tarantino

The most important features to assess the severity of an epidemic are its size and its timescale. We discuss these features in a systematic way in the context of SIR and SIR-type models. We investigate in detail how the size and timescale…

Populations and Evolution · Quantitative Biology 2020-06-29 Mariano Cadoni , Giuseppe Gaeta

The daily fluctuations in the released number of Covid-19 cases played a big role both at the beginning and in the most critical weeks of the outbreak, when local authorities in Italy had to decide whether to impose a lockdown and at which…

Methodology · Statistics 2020-06-24 Claudia Furlan , Cinzia Mortarino

I use a very simple deterministic model for the spread of Covid-19 in a large population. Using this to compare the relative decay of the number of deaths per day between different regions in Italy, Spain and England, each applying in…

Populations and Evolution · Quantitative Biology 2020-05-26 Robert S Thorne

Standard epidemiological models for COVID-19 employ variants of compartment (SIR) models at local scales, implicitly assuming spatially uniform local mixing. Here, we examine the effect of employing more geographically detailed diffusion…

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