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Consider the macroscale modelling of microscale spatiotemporal dynamics. Here we develop a new approach to ensure coarse scale discrete models preserve important self-adjoint properties of the fine scale dynamics. The first part explores…

Cellular Automata and Lattice Gases · Physics 2008-11-06 A. J. Roberts

Contractile actomyosin network flows are crucial for many cellular processes including cell division and motility, morphogenesis and transport. How local remodeling of actin architecture tunes stress production and dissipation and regulates…

Recent research has shown that motile cells can adapt their mode of propulsion to the mechanical properties of the environment in which they find themselves--crawling in some environments while swimming in others. The latter can involve…

Biological Physics · Physics 2018-05-24 Hao Wu , Marco Avila Ponce de Leon , Hans G. Othmer

Transport at microscopic length scales is essential in biological systems and various technologies, including microfluidics. Recent experiments achieved self-organized transport phenomena in microtubule active matter using light to modulate…

Soft Condensed Matter · Physics 2021-08-02 Dominik Schildknecht , Matt Thomson

In rotating stars and planets, excitation of inertial waves in convective envelopes provides an important channel for tidal dissipation, but the dissipation rate due to inertial waves depends erratically on the tidal frequency. Tidal…

Fluid Dynamics · Physics 2021-09-29 Yufeng Lin , Gordon I. Ogilvie

The three dimensional structure of DNA in the nucleus (chromatin) plays an important role in many cellular processes. Recent experimental advances have led to high-throughput methods of capturing information about chromatin conformation on…

Genomics · Quantitative Biology 2015-11-05 Kevin Emmett , Benjamin Schweinhart , Raul Rabadan

From flocks of birds to biomolecular assemblies, systems in which many individual components independently consume energy to perform mechanical work exhibit a wide array of striking behaviors. Methods to quantify the dynamics of these so…

The study of systems with sustained energy uptake and dissipation at the scale of the constituent particles is an area of central interest in nonequilibrium statistical physics. Identifying such systems as a distinct category -- Active…

Statistical Mechanics · Physics 2017-06-07 Sriram Ramaswamy

Understanding how growth induces form is a longstanding biological question. Many studies concentrated on the shapes of plant cells, fungi or bacteria. Some others have shown the importance of the mechanical properties of bacterial walls…

Biological Physics · Physics 2007-05-23 Arezki Boudaoud

Characterizing the link between small-scale chromatin structure and large-scale chromosome folding during interphase is a prerequisite for understanding transcription. Yet, this link remains poorly investigated. Here, we introduce a simple…

Soft Condensed Matter · Physics 2016-09-28 Ana Maria Florescu , Pierre Therizols , Angelo Rosa

Active particles contain internal degrees of freedom with the ability to take in and dissipate energy and, in the process, execute systematic movement. Examples include all living organisms and their motile constituents such as molecular…

Soft Condensed Matter · Physics 2015-05-18 Sriram Ramaswamy

Dynamical clustering represents a characteristic feature of active matter consisting of self-propelled agents that convert energy from the environment into mechanical motion. At the micron scale, typical of overdamped dynamics, particles…

Soft Condensed Matter · Physics 2024-06-04 Lorenzo Caprini , Davide Breoni , Anton Ldov , Christian Scholz , Hartmut Löwen

In this paper we calculate and visualize the dynamics of an ensemble of electrons trapping in an electrostatic wave of slowly increasing amplitude, illustrating that, despite disordering of particles in angle during the trapping transition…

Plasma Physics · Physics 2009-01-29 R. L. Dewar , J. C. -C. Yap

Liquid-liquid phase separation is important across biology, physics, and materials science. Although usually studied at equilibrium, active components - such as motor proteins, enzymes, and synthetic microswimmers - are increasingly…

Soft Condensed Matter · Physics 2026-01-06 Kan Chang , Yulin Li , Ming Yuan , Masaki Sano , Zhihong You , H. P. Zhang

We present a theory for the diffraction of large molecules or nanoparticles at a standing light wave. Such particles can act as a genuine photon absorbers due to their numerous internal degrees of freedom effecting fast internal energy…

Quantum Physics · Physics 2016-10-26 Kai Walter , Stefan Nimmrichter , Klaus Hornberger

Observed angular positions and redshifts of large-scale structure tracers such as galaxies are affected by gravitational waves through volume distortion and magnification effects. Thus, a gravitational wave background can in principle be…

Cosmology and Nongalactic Astrophysics · Physics 2013-05-30 Donghui Jeong , Fabian Schmidt

Eukaryotic cells and intracellular pathogens such as bacteria or viruses utilize the actin polymerization machinery to propel themselves forward. Thereby, the onset of motion and choice of direction may be the result of a spontaneous…

Soft Condensed Matter · Physics 2009-09-04 Karin John , Denis Caillerie , Philippe Peyla , Mourad Ismail , Annie Raoult , Jacques Prost

Multiscale molecular modeling is widely applied in scientific research of molecular properties over large time and length scales. Two specific challenges are commonly present in multiscale modeling, provided that information between the…

Computational Physics · Physics 2024-07-23 Jun Zhang , Xiaohan Lin , Weinan E , Yi Qin Gao

We review recent research on the transport properties of classical waves through chaotic systems with special emphasis on microwaves and sound waves. Inasmuch as these experiments use antennas or transducers to couple waves into or out of…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 U. Kuhl , H. -J. Stoeckmann , R. Weaver

Magnons are elementary excitations in magnetic materials and undergo nonlinear multimode scattering processes at large input powers. In experiments and simulations, we show that the interaction between magnon modes of a confined magnetic…

Mesoscale and Nanoscale Physics · Physics 2023-08-02 Lukas Körber , Christopher Heins , Tobias Hula , Joo-Von Kim , Helmut Schultheiss , Jürgen Fassbender , Katrin Schultheiss