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Transformer-based models have achieved remarkable success in natural language and vision tasks, but their application to gene expression analysis remains limited due to data sparsity, high dimensionality, and missing values. We present…

Machine Learning · Computer Science 2025-04-15 Shuai Jiang , Saeed Hassanpour

As a step toward better document-level understanding, we explore classification of a sequence of sentences into their corresponding categories, a task that requires understanding sentences in context of the document. Recent successful…

Computation and Language · Computer Science 2021-03-24 Arman Cohan , Iz Beltagy , Daniel King , Bhavana Dalvi , Daniel S. Weld

Language model (LM) pretraining can learn various knowledge from text corpora, helping downstream tasks. However, existing methods such as BERT model a single document, and do not capture dependencies or knowledge that span across…

Computation and Language · Computer Science 2022-03-31 Michihiro Yasunaga , Jure Leskovec , Percy Liang

Self-supervised learning has become increasingly important to leverage the abundance of unlabeled data available on platforms like YouTube. Whereas most existing approaches learn low-level representations, we propose a joint…

Computer Vision and Pattern Recognition · Computer Science 2019-09-13 Chen Sun , Austin Myers , Carl Vondrick , Kevin Murphy , Cordelia Schmid

This paper presents a novel approach to accurately classify the hallmarks of cancer, which is a crucial task in cancer research. Our proposed method utilizes the Bidirectional Encoder Representations from Transformers (BERT) architecture,…

Computation and Language · Computer Science 2023-06-08 Sultan Zavrak , Seyhmus Yilmaz

Scientific document representation learning provides powerful embeddings for various tasks, while current methods face challenges across three approaches. 1) Contrastive training with citation-structural signals underutilizes citation…

Information Retrieval · Computer Science 2025-09-10 Zheng Dou , Deqing Wang , Fuzhen Zhuang , Jian Ren , Yanlin Hu

The Transformer architecture and transfer learning have marked a quantum leap in natural language processing, improving the state of the art across a range of text-based tasks. This paper examines how these advancements can be applied to…

Software Engineering · Computer Science 2022-08-29 Pasquale Salza , Christoph Schwizer , Jian Gu , Harald C. Gall

The success of bidirectional encoders using masked language models, such as BERT, on numerous natural language processing tasks has prompted researchers to attempt to incorporate these pre-trained models into neural machine translation…

Computation and Language · Computer Science 2021-09-13 Haoran Xu , Benjamin Van Durme , Kenton Murray

This paper makes two contributions to the field of text-based patent similarity. First, it compares the performance of different kinds of patent-specific pretrained embedding models, namely static word embeddings (such as word2vec and…

Computation and Language · Computer Science 2024-03-26 Grazia Sveva Ascione , Valerio Sterzi

The contextual word embedding model, BERT, has proved its ability on downstream tasks with limited quantities of annotated data. BERT and its variants help to reduce the burden of complex annotation work in many interdisciplinary research…

Computation and Language · Computer Science 2022-04-07 Gechuan Zhang , Paul Nulty , David Lillis

Document screening is a central task within Evidenced Based Medicine, which is a clinical discipline that supplements scientific proof to back medical decisions. Given the recent advances in DL (Deep Learning) methods applied to Information…

Information Retrieval · Computer Science 2021-04-20 Alexandros Ioannidis

Large language models record impressive performance on many natural language processing tasks. However, their knowledge capacity is limited to the pretraining corpus. Retrieval augmentation offers an effective solution by retrieving context…

Computation and Language · Computer Science 2023-11-22 Sai Munikoti , Anurag Acharya , Sridevi Wagle , Sameera Horawalavithana

In this paper, we propose Stacked DeBERT, short for Stacked Denoising Bidirectional Encoder Representations from Transformers. This novel model improves robustness in incomplete data, when compared to existing systems, by designing a novel…

Computation and Language · Computer Science 2021-01-15 Gwenaelle Cunha Sergio , Minho Lee

We propose a new technique for computational language representation called elementwise embedding, in which a material (semantic unit) is abstracted into a horizontal concatenation of lower-dimensional element (character) embeddings. While…

Computation and Language · Computer Science 2023-02-28 Dunam Kim , Jeeeun Kim

Pre-training a transformer-based model for the language modeling task in a large dataset and then fine-tuning it for downstream tasks has been found very useful in recent years. One major advantage of such pre-trained language models is…

Computation and Language · Computer Science 2020-11-17 Md Tahmid Rahman Laskar , Enamul Hoque , Jimmy Xiangji Huang

Pre-trained contextual language models are ubiquitously employed for language understanding tasks, but are unsuitable for resource-constrained systems. Noncontextual word embeddings are an efficient alternative in these settings. Such…

Computation and Language · Computer Science 2023-04-24 Anik Saha , Alex Gittens , Bulent Yener

Contextual word representations, typically trained on unstructured, unlabeled text, do not contain any explicit grounding to real world entities and are often unable to remember facts about those entities. We propose a general method to…

Computation and Language · Computer Science 2019-11-01 Matthew E. Peters , Mark Neumann , Robert L. Logan , Roy Schwartz , Vidur Joshi , Sameer Singh , Noah A. Smith

One of the current state-of-the-art multilingual document embedding model LASER is based on the bidirectional LSTM neural machine translation model. This paper presents a transformer-based sentence/document embedding model, T-LASER, which…

Computation and Language · Computer Science 2020-08-21 Wei Li , Brian Mak

Most approaches for similar text retrieval and ranking with long natural language queries rely at some level on queries and responses having words in common with each other. Recent applications of transformer-based neural language models to…

Information Retrieval · Computer Science 2020-05-22 Javed Qadrud-Din , Ashraf Bah Rabiou , Ryan Walker , Ravi Soni , Martin Gajek , Gabriel Pack , Akhil Rangaraj

Natural Language Processing (NLP) has witnessed a transformative leap with the advent of transformer-based architectures, which have significantly enhanced the ability of machines to understand and generate human-like text. This paper…

Computation and Language · Computer Science 2025-03-27 Tianhao Wu , Yu Wang , Ngoc Quach