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We propose a flexible and multi-scale method for organizing, visualizing, and understanding datasets sampled from or near stratified spaces. The first part of the algorithm produces a cover tree using adaptive thresholds based on a…

Computational Geometry · Computer Science 2016-03-01 Paul Bendich , Ellen Gasparovic , Christopher J. Tralie , John Harer

We propose dynamical systems trees (DSTs) as a flexible class of models for describing multiple processes that interact via a hierarchy of aggregating parent chains. DSTs extend Kalman filters, hidden Markov models and nonlinear dynamical…

Machine Learning · Computer Science 2012-07-19 Andrew Howard , Tony S. Jebara

The R package GFA provides a full pipeline for factor analysis of multiple data sources that are represented as matrices with co-occurring samples. It allows learning dependencies between subsets of the data sources, decomposed into latent…

Mathematical Software · Computer Science 2016-11-08 Eemeli Leppäaho , Muhammad Ammad-ud-din , Samuel Kaski

Attention networks have proven to be an effective approach for embedding categorical inference within a deep neural network. However, for many tasks we may want to model richer structural dependencies without abandoning end-to-end training.…

Computation and Language · Computer Science 2017-02-17 Yoon Kim , Carl Denton , Luong Hoang , Alexander M. Rush

Large networks of queueing systems model important real-world systems such as MapReduce clusters, web-servers, hospitals, call centers and airport passenger terminals. To model such systems accurately, we must infer queueing parameters from…

Computation · Statistics 2021-04-20 Anthony Ebert , Paul Wu , Kerrie Mengersen , Fabrizio Ruggeri

Survival analysis of right censored data arises often in many areas of research including medical research. Effect of covariates (and their interactions) on survival distribution can be studied through existing methods which requires to…

Methodology · Statistics 2021-08-11 Madan Gopal Kundu , Samiran Ghosh

The HCV package implements the hierarchical clustering for spatial data. It requires clustering results not only homogeneous in non-geographical features among samples but also geographically close to each other within a cluster. We…

Computation · Statistics 2022-01-21 ShengLi Tzeng , Hao-Yun Hsu

The concept of structured occurrence nets is an extension of that of occurrence nets which are directed acyclic graphs that represent causality and concurrency information concerning a single execution of a distributed system. The formalism…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-17 Mohammed Alahmadi , Salma Alharbi , Talal Alharbi , Nadiyah Almutairi , Tuwailaa Alshammari , Anirban Bhattacharyya , Maciej Koutny , Bowen Li , Brian Randell

Simulated high-dimensional data is useful for testing, validating, and improving algorithms used in dimension reduction, supervised and unsupervised learning. High-dimensional data is characterized by multiple variables that are dependent…

In data analysis, latent variables play a central role because they help provide powerful insights into a wide variety of phenomena, ranging from biological to human sciences. The latent tree model, a particular type of probabilistic…

Machine Learning · Computer Science 2014-02-05 Raphaël Mourad , Christine Sinoquet , Nevin L. Zhang , Tengfei Liu , Philippe Leray

The development of machine learning algorithms in the cyber security domain has been impeded by the complex, hierarchical, sequential and multimodal nature of the data involved. In this paper we introduce the notion of a streaming tree as a…

Cryptography and Security · Computer Science 2021-09-30 Thomas Cochrane , Peter Foster , Varun Chhabra , Maud Lemercier , Cristopher Salvi , Terry Lyons

The use of cumulative incidence functions for characterizing the risk of one type of event in the presence of others has become increasingly popular over the past decade. The problems of modeling, estimation and inference have been treated…

Methodology · Statistics 2020-11-16 Youngjoo Cho , Annette M. Molinaro , Chen Hu , Robert L. Strawderman

Sorted Table Search Procedures are the quintessential query-answering tool, with widespread usage that now includes also Web Applications, e.g, Search Engines (Google Chrome) and ad Bidding Systems (AppNexus). Speeding them up, at very…

Machine Learning · Computer Science 2020-07-31 Domenico Amato , Giosué Lo Bosco , Raffaele Giancarlo

We introduce an R package, PCMBase, to rapidly calculate the likelihood for multivariate phylogenetic comparative methods. The package is not specific to particular models but offers the user the functionality to very easily implement a…

Populations and Evolution · Quantitative Biology 2019-12-13 Venelin Mitov , Krzysztof Bartoszek , Georgios Asimomitis , Tanja Stadler

Dynamic regression trees are an attractive option for automatic regression and classification with complicated response surfaces in on-line application settings. We create a sequential tree model whose state changes in time with the…

Methodology · Statistics 2010-11-23 Matthew A. Taddy , Robert B. Gramacy , Nicholas G. Polson

We propose a new approach to image segmentation, which exploits the advantages of both conditional random fields (CRFs) and decision trees. In the literature, the potential functions of CRFs are mostly defined as a linear combination of…

Computer Vision and Pattern Recognition · Computer Science 2017-03-28 Fayao Liu , Guosheng Lin , Ruizhi Qiao , Chunhua Shen

Feature Selection (FS) is a key task in Machine Learning. It consists in selecting a number of relevant variables for the model construction or data analysis. We present the R package, FSinR, which implements a variety of widely known…

Machine Learning · Computer Science 2020-02-25 F. Aragón-Royón , A. Jiménez-Vílchez , A. Arauzo-Azofra , J. M. Benítez

We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…

Combinatorics · Mathematics 2017-02-28 Reinhard Diestel

Calendars are broadly used in society to display temporal information, and events. This paper describes a new R package with functionality to organize and display temporal data, collected on sub-daily resolution, into a calendar layout. The…

Applications · Statistics 2018-10-24 Earo Wang , Dianne Cook , Rob J Hyndman

The TrendLSW R package has been developed to provide users with a suite of wavelet-based techniques to analyse the statistical properties of nonstationary time series. The key components of the package are (a) two approaches for the…

Methodology · Statistics 2024-11-06 Euan T. McGonigle , Rebecca Killick , Matthew A. Nunes