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In this work we addressed the problem of capturing sequential information contained in longitudinal electronic health records (EHRs). Clinical notes, which is a particular type of EHR data, are a rich source of information and practitioners…

Computation and Language · Computer Science 2020-10-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Hao Ni , Goran Nenadic , Alejo Nevado-Holgado

Medical decisions directly impact individuals' health and well-being. Extracting decision spans from clinical notes plays a crucial role in understanding medical decision-making processes. In this paper, we develop a new dataset called…

Computation and Language · Computer Science 2024-08-26 Mohamed Elgaar , Jiali Cheng , Nidhi Vakil , Hadi Amiri , Leo Anthony Celi

Despite biographies are widely spread within the Semantic Web, resources and approaches to automatically extract biographical events are limited. Such limitation reduces the amount of structured, machine-readable biographical information,…

Computation and Language · Computer Science 2022-06-09 Marco Antonio Stranisci , Enrico Mensa , Ousmane Diakite , Daniele Radicioni , Rossana Damiano

Objective: this study has a twofold goal. First, it aims to improve the understanding of the impact of Dementia of type Alzheimer's Disease (AD) on different aspects of the lexicon. Second, it aims to demonstrate that such aspects of the…

Computation and Language · Computer Science 2023-07-18 M. Zakaria Kurdi

As online health communities (OHCs) grow, users find it challenging to properly search, read, and contribute to the community because of its overwhelming content. Our goal is to understand OHC users' needs and requirements for better…

Human-Computer Interaction · Computer Science 2015-07-01 Jina Huh , Bum Chul Kwon , Jaegul Choo , Sung-Hee Kim , Ji Soo Yi

Information Extraction is a well-researched area of Natural Language Processing with applications in web search and question answering concerned with identifying entities and relationships between them as expressed in a given context,…

Information Retrieval · Computer Science 2020-11-17 Erin Macdonald , Denilson Barbosa

Dialogue Acts (DAs) can be used to explain what expert tutors do and what students know during the tutoring process. Most empirical studies adopt the random sampling method to obtain sentence samples for manual annotation of DAs, which are…

Computation and Language · Computer Science 2023-04-13 Wei Tan , Jionghao Lin , David Lang , Guanliang Chen , Dragan Gasevic , Lan Du , Wray Buntine

Event extraction is an important natural language processing (NLP) task of identifying events in an unstructured text. Although a plethora of works deal with event extraction from new articles, clinical text etc., only a few works focus on…

Information Retrieval · Computer Science 2026-02-27 Chaitanya Kirti , Ayon Chattopadhyay , Ashish Anand , Prithwijit Guha

Asynchronous events on the continuous time domain, e.g., social media actions and stock transactions, occur frequently in the world. The ability to recognize occurrence patterns of event sequences is crucial to predict which typeof events…

Machine Learning · Computer Science 2020-02-17 Qiang Zhang , Aldo Lipani , Omer Kirnap , Emine Yilmaz

This paper describes about information extraction system, which is an extension of the system developed by team Hitachi for "Disease/Disorder Template filling" task organized by ShARe/CLEF eHealth Evolution Lab 2014. In this extension…

Artificial Intelligence · Computer Science 2016-02-02 Sarath P R , Sunil Mandhan , Yoshiki Niwa

Purpose: To develop high throughput multi-label annotators for body (chest, abdomen, and pelvis) Computed Tomography (CT) reports that can be applied across a variety of abnormalities, organs, and disease states. Approach: We used a…

Extracting fine-grained experimental findings from literature can provide dramatic utility for scientific applications. Prior work has developed annotation schemas and datasets for limited aspects of this problem, failing to capture the…

Computation and Language · Computer Science 2024-04-26 Aakanksha Naik , Bailey Kuehl , Erin Bransom , Doug Downey , Tom Hope

Structural heart disease (SHD) is a prevalent condition with many undiagnosed cases, and early detection is often limited by the high cost and accessibility constraints of echocardiography (ECHO). Recent studies show that artificial…

Applications · Statistics 2026-03-04 Ya Zhou , Zhaohong Sun , Tianxiang Hao , Xiangjie Li

We present the construction of an annotated corpus of PubMed abstracts reporting about positive, negative or neutral effects of treatments or substances. Our ultimate goal is to annotate one sentence (rationale) for each abstract and to use…

Computation and Language · Computer Science 2019-12-05 Evgeni Stefchov , Galia Angelova , Preslav Nakov

Objective: The reading level of health educational materials significantly influences the understandability and accessibility of the information, particularly for minoritized populations. Many patient educational resources surpass the…

Computation and Language · Computer Science 2024-11-12 Md Mushfiqur Rahman , Mohammad Sabik Irbaz , Kai North , Michelle S. Williams , Marcos Zampieri , Kevin Lybarger

The processing of entities in natural language is essential to many medical NLP systems. Unfortunately, existing datasets vastly under-represent the entities required to model public health relevant texts such as health advice often found…

Computation and Language · Computer Science 2022-10-10 Joseph Gatto , Parker Seegmiller , Garrett Johnston , Sarah M. Preum

Recently, attempts have been made to reduce annotation requirements in feature-based self-explanatory models for lung nodule diagnosis. As a representative, cRedAnno achieves competitive performance with considerably reduced annotation…

Image and Video Processing · Electrical Eng. & Systems 2022-11-09 Jiahao Lu , Chong Yin , Kenny Erleben , Michael Bachmann Nielsen , Sune Darkner

A primary motivation for the development and implementation of structural health monitoring systems, is the prospect of gaining the ability to make informed decisions regarding the operation and maintenance of structures and infrastructure.…

Machine Learning · Computer Science 2021-11-17 A. J. Hughes , L. A. Bull , P. Gardner , R. J. Barthorpe , N. Dervilis , K. Worden

Adverse drug events (ADEs) are unexpected incidents caused by the administration of a drug or medication. To identify and extract these events, we require information about not just the drug itself but attributes describing the drug (e.g.,…

Computation and Language · Computer Science 2021-04-23 Darshini Mahendran , Bridget T. McInnes

Most research on emotion analysis from text focuses on the task of emotion classification or emotion intensity regression. Fewer works address emotions as a phenomenon to be tackled with structured learning, which can be explained by the…

Computation and Language · Computer Science 2020-03-04 Laura Bostan , Evgeny Kim , Roman Klinger