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Probe-based data storage attracted many researchers from academia and industry, resulting in unprecendeted high data-density demonstrations. This topical review gives a comprehensive overview of the main contributions that led to the major…

Instrumentation and Detectors · Physics 2015-11-30 Wabe W. Koelmans , Johan B. C. Engelen , L. Abelmann

Physics is living an era of unprecedented cross-fertilization among the different areas of science. In this perspective review, we discuss the manifold impact that ultracold-atom quantum technologies can have in fundamental and applied…

Quantum Physics · Physics 2024-05-13 Jorge Yago Malo , Luca Lepori , Laura Gentini , Maria Luisa Chiofalo

Pre-trained Vision-Language Models (VLMs) have recently shown promise in detecting anomalies. However, previous approaches are fundamentally limited by their reliance on human-designed prompts and the lack of accessible anomaly samples,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-25 Pi-Wei Chen , Jerry Chun-Wei Lin , Wei-Han Chen , Jia Ji , Zih-Ching Chen , Feng-Hao Yeh , Chao-Chun Chen

Summary: Mass spectrometry coupled to liquid chromatography (LC-MS/MS) is a powerful technique for the charac-terisation of proteomes. However, the diverse software platforms available for processing the raw proteomics data, each produce…

Every research project necessitates data, often requiring sharing and collaborative review within a team. However, there is a dearth of good open-source data sharing and reviewing services. Existing file-sharing services generally mandate…

Databases · Computer Science 2024-06-27 Lexington Whalen , Homayoun Valafar

The Statistical Toolkit is an open source system specialized in the statistical comparison of distributions. It addresses requirements common to different experimental domains, such as simulation validation (e.g. comparison of experimental…

Computational Physics · Physics 2015-06-11 M Batic , A. M. Paganoni , A. Pfeiffer , M. G. Pia , A. Ribon

Upcoming and future astronomy research facilities will systematically generate terabyte-sized data sets moving astronomy into the Petascale data era. While such facilities will provide astronomers with unprecedented levels of accuracy and…

Instrumentation and Methods for Astrophysics · Physics 2011-11-30 A. H. Hassan , C. J. Fluke , D. G. Barnes

We report our design, development, installation and troubleshooting of an open source Gnome X Scanning Microscopy (GXSM) software package for controlling and processing of modern Scanning Probe Microscopy (SPM) system as a development tool…

Instrumentation and Detectors · Physics 2014-10-13 S. K. Suresh Babu , J. S. Devrenjith Singh , D. Jackuline Moni , D. Devaprakasam

Among liquid argon time projection chamber (LArTPC) experiments MicroBooNE is the one that continually took physics data for the longest time (2015-2021), and represents the state of the art for reconstruction and analysis with this…

High Energy Physics - Experiment · Physics 2023-12-13 Giuseppe Cerati

A fundamental task in photonics is to characterise an unknown optical process, defined by properties such as birefringence, spectral response, thickness and flatness. Amongst many ways to achieve this, single-photon probes can be used in a…

Analyzing the increasingly large volumes of data that are available today, possibly including the application of custom machine learning models, requires the utilization of distributed frameworks. This can result in serious productivity…

Databases · Computer Science 2019-08-20 Phanwadee Sinthong , Michael J. Carey

Digital electronics is a technological cornerstone in our modern society which has covered the increasing demand in computing power during the last decades thanks to a periodic doubling of transistor density and power efficiency in…

Emerging Technologies · Computer Science 2022-03-29 Andrés Macho-Ortiz , Daniel Pérez-López , José Azaña , José Capmany

With the constantly advancing capabilities of quantum computers, conventional cryptographic systems relying on complex math problems may encounter unforeseen vulnerabilities. Unlike regular computers, which are often deemed cost-ineffective…

Cryptography and Security · Computer Science 2024-09-18 Emils Bagirovs , Grigory Provodin , Tuomo Sipola , Jari Hautamäki

The thousandfold increase in data-collection speed enabled by aberration-corrected optics allows us to overcome an electron microscopy paradox - how to obtain atomic-resolution chemical structure in individual nanoparticles, yet record a…

This system paper presents the Topology ToolKit (TTK), a software platform designed for topological data analysis in scientific visualization. TTK provides a unified, generic, efficient, and robust implementation of key algorithms for the…

Graphics · Computer Science 2019-07-18 Julien Tierny , Guillaume Favelier , Joshua A. Levine , Charles Gueunet , Michael Michaux

Tomography is a widely used tool for analyzing microstructures in three dimensions (3D). The analysis, however, faces difficulty because the constituent materials produce similar grey-scale values. Sometimes, this prompts the image…

Materials Science · Physics 2021-09-28 Anand V. Patel , Tao Hou , Juan D. Beltran Rodriguez , Tamal K. Dey , Dunbar P. Birnie

An open-source, Python-based Temporal Analysis of Products (TAP) reactor simulation and processing program is introduced. TAPsolver utilizes algorithmic differentiation for the calculation of highly accurate derivatives, which are used to…

Computational Engineering, Finance, and Science · Computer Science 2020-09-01 Adam Yonge , M. Ross Kunz , Rakesh Batchu , Zongtang Fang , Tobin Issac , Rebecca Fushimi , Andrew J. Medford

The usage of the high-level scripting language Python has enabled new mechanisms for data interrogation, discovery and visualization of scientific data. We present yt, an open source, community-developed astrophysical analysis and…

Instrumentation and Methods for Astrophysics · Physics 2011-12-21 Matthew J. Turk , Britton D. Smith

Background: We describe an informatics framework for researchers and clinical investigators to efficiently perform parameter sensitivity analysis and auto-tuning for algorithms that segment and classify image features in a large dataset of…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-13 George Teodoro , Tahsin Kurc , Luis F. R. Taveira , Alba C. M. A. Melo , Jun Kong , Joel Saltz

StructOpt, an open-source structure optimization suite, applies genetic algorithm and particle swarm methods to obtain atomic structures that minimize an objective function. The objective function typically consists of the energy and the…

Computational Physics · Physics 2019-01-10 Jason J. Maldonis , Zhongnan Xu , Zhewen Song , Min Yu , Tam Mayeshiba , Dane Morgan , Paul M. Voyles