Related papers: Pattern Discovery in Colored Strings

In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…

The parameterized matching problem is a variant of string matching, which is to search for all parameterized occurrences of a pattern $P$ in a text $T$. In considering matching algorithms, the combinatorial natures of strings, especially…

In this paper we present algorithms for several string problems in the Congested Clique model. In the Congested Clique model, $n$ nodes (computers) are used to solve some problem. The input to the problem is distributed among the nodes, and…

Graph colorings have been of interest to mathematicians for a long time, but relatively recently, social scientists have also found them to be interesting tools for studying group behavior. In the last 20 years, scientists have begun to…

A celebrated theorem of Spencer states that for every set system $S_1,\dots, S_m \subseteq [n]$, there is a coloring of the ground set with $\{\pm 1\}$ with discrepancy $O(\sqrt{n\log(m/n+2)})$. We provide an algorithm to find such a…

String matching is the problem of finding all the substrings of a text which match a given pattern. It is one of the most investigated problems in computer science, mainly due to its very diverse applications in several fields. Recently,…

We study graph coloring problems in the streaming model, where the goal is to process an $n$-vertex graph whose edges arrive in a stream, using a limited space that is smaller than the trivial $O(n^2)$ bound. While prior work has largely…

We study the design of efficient algorithms for combinatorial pattern matching. More concretely, we study algorithms for tree matching, string matching, and string matching in compressed texts.

The classical pattern matching asks for locating all occurrences of one string, called the pattern, in another, called the text, where a string is simply a sequence of characters. Due to the potential practical applications, it is desirable…

This paper investigates two issues on identification of switched linear systems: persistence of excitation and numerical algorithms. The main contribution is a much weaker condition on the regressor to be persistently exciting that…

In this paper we consider several variants of the pattern matching problem. In particular, we investigate the following problems: 1) Pattern matching with k mismatches; 2) Approximate counting of mismatches; and 3) Pattern matching with…

The problem of reconstructing strings from their substring spectra has a long history and in its most simple incarnation asks for determining under which conditions the spectrum uniquely determines the string. We study the problem of coded…

Several biological problems require the identification of regions in a sequence where some feature occurs within a target density range: examples including the location of GC-rich regions, identification of CpG islands, and sequence…

In the Properly Colored Spanning Tree problem, we are given an edge-colored undirected graph and the goal is to find a spanning tree in which any two adjacent edges have distinct colors. Since finding such a tree is NP-hard in general,…

Let P be a set of n points and each of the points is colored with one of the k possible colors. We present efficient algorithms to pre-process P such that for a given query point q, we can quickly identify the smallest color spanning object…

Arrangements of pseudolines are a widely studied generalization of line arrangements. They are defined as a finite family of infinite curves in the Euclidean plane, any two of which intersect at exactly one point. One can state various…

Given a graph, an edge coloring assigns colors to edges so that no pairs of adjacent edges share the same color. We are interested in edge coloring algorithms under the W-streaming model. In this model, the algorithm does not have enough…

Suppose we are asked to preprocess a string \(s [1..n]\) such that later, given a substring's endpoints, we can quickly count how many distinct characters it contains. In this paper we give a data structure for this problem that takes \(n…

We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent with respect to postfix order and ancestrality. This problem…

A rooted tree $\vec{R}$ is a rooted subtree of a tree $T$ if the tree obtained by replacing the directed edges of $\vec{R}$ by undirected edges is a subtree of $T$. We study the problem of assigning minimum number of colors to a given set…