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We describe the current state and future plans for a set of tools for scientific data management (SDM) designed to support scientific transparency and reproducible research. SDM has been in active use at our MRI Center for more than two…

Quantitative Methods · Quantitative Biology 2015-02-25 B. A. Wandell , A. Rokem , L. M. Perry , G. Schaefer , R. F. Dougherty

Scientific data management is at a critical juncture, driven by exponential data growth, increasing cross-domain dependencies, and a severe reproducibility crisis in modern research. Traditional centralized data management approaches are…

Databases · Computer Science 2025-04-30 Sebastian Beyvers , Jannis Hochmuth , Lukas Brehm , Maria Hansen , Alexander Goesmann , Frank Förster

Data management, which encompasses activities and strategies related to the storage, organization, and description of data and other research materials, helps ensure the usability of datasets -- both for the original research team and for…

Digital Libraries · Computer Science 2022-04-14 John A. Borghi , Ana E. Van Gulick

Recent developments in Artificial Intelligence techniques have enabled their successful application across a spectrum of commercial and industrial settings. However, these techniques require large volumes of data to be aggregated in a…

Cryptography and Security · Computer Science 2023-04-04 Dengsheng Chen , Vince Tan , Zhilin Lu , Jie Hu

The emergence of sixth-generation (6G) networks has spurred the development of novel testbeds, including sub-THz networks, cell-free systems, and 6G simulators. To maximize the benefits of these systems, it is crucial to make the generated…

Many fields of science rely on relational database management systems to analyze, publish and share data. Since RDBMS are originally designed for, and their development directions are primarily driven by, business use cases they often lack…

Databases · Computer Science 2013-08-08 László Dobos , Alexander S. Szalay , Tamás Budavári , István Csabai , Nolan Li

Many research questions can be answered quickly and efficiently using data already collected for previous research. This practice is called secondary data analysis (SDA), and has gained popularity due to lower costs and improved research…

Digital Libraries · Computer Science 2020-04-07 Yasith Jayawardana , Sampath Jayarathna

This paper describes an information system designed to support the large volume of monitoring information generated by a distributed testbed. This monitoring information is produced by several subsystems and consists of status and…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-12-13 Warren Smith , Shava Smallen

Over the last two decades, scientific workflow management systems (SWfMS) have emerged as a means to facilitate the design, execution, and monitoring of reusable scientific data processing pipelines. At the same time, the amounts of data…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-03-29 Marc Bux , Ulf Leser

Scientific data governance should prioritize maximizing the utility of data throughout the research lifecycle. Research software systems that enable analysis reproducibility inform data governance policies and assist administrators in…

Advances in technology and computing hardware are enabling scientists from all areas of science to produce massive amounts of data using large-scale simulations or observational facilities. In this era of data deluge, effective coordination…

Databases · Computer Science 2015-03-31 Spyros Blanas , Surendra Byna

The digitalisation of research requires data management systems capable of supporting a broad spectrum of usage scenarios, ranging from document-oriented repositories to fully factographic environments. This paper introduces a…

Digital Libraries · Computer Science 2025-10-22 Victor Dudarev , Alfred Ludwig

Extensive data processing is becoming commonplace in many fields of science. Distributing data to processing sites and providing methods to share the data with collaborators efficiently has become essential. The Open Science Data Federation…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-18 Fabio Andrijauskas , Derek Weitzel , Frank Wuerthwein

The reuse of research software is central to research efficiency and academic exchange. The application of software enables researchers with varied backgrounds to reproduce, validate, and expand upon study findings. Furthermore, the…

The increasing volumes of data produced by high-throughput instruments coupled with advanced computational infrastructures for scientific computing have enabled what is often called a {\em Fourth Paradigm} for scientific research based on…

Storing data is easy, but finding and using data is not. It is desirable that the data is stored in a structured format, which can be preserved and retrieved in future. Creating Metadata for the data is one way of creating structured data…

Information Theory · Computer Science 2011-01-04 Ranjeet Devarakonda , Giri Palanisamy , Jim Green

The real-world implementation of federated learning is complex and requires research and development actions at the crossroad between different domains ranging from data science, to software programming, networking, and security. While…

Machine learning in medical research, by nature, needs careful attention on obeying the regulations of data privacy, making it difficult to train a machine learning model over gathered data from different medical centers. Failure of…

Machine Learning · Computer Science 2021-10-19 Jun Luo , Shandong Wu

In materials science and manufacturing, vast amounts of heterogeneous data (e.g., measurement and simulation logs, process data, publications) serve as the bedrock of valuable knowledge for various engineering applications. However,…

As the amount of scientific data continues to grow at ever faster rates, the research community is increasingly in need of flexible computational infrastructure that can support the entirety of the data science lifecycle, including…

Computers and Society · Computer Science 2016-04-12 Robert L. Grossman , Allison Heath , Mark Murphy , Maria Patterson , Walt Wells
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