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Since the first case of COVID-19 disease in Wuhan in December 2019, there is a worldwide struggle to reduce the transmission of acute respiratory syndrome coronavirus SARS-CoV-2. Many countries worldwide decided to impose local lockdowns in…

Other Quantitative Biology · Quantitative Biology 2022-08-09 Daniela Dobrynin , Iryna Polishchuk , Boaz Pokroy

Airborne respiratory diseases such as SARS-CoV-2 (COVID-19) pose significant challenges for public transportation. Several recent outbreaks of SARS-CoV-2 indicate the high risk of transmission among passengers on public buses if special…

Fluid Dynamics · Physics 2021-02-03 Zhihang Zhang , Taehoon Han , Kwang Hee Yoo , Jesse Capecelatro , Andre Boehman , Kevin Maki

Currently, many countries are considering the introduction of tracing software on mobile smartphones with the main purpose to inform and alarm the mobile app user. Here, we demonstrate that, in addition to alarming and informing, mobile…

Social and Information Networks · Computer Science 2020-09-22 Bastian Prasse , Piet Van Mieghem

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) emergence began in late 2019 and has since spread rapidly worldwide. The characteristics of respiratory immune response to this emerging virus is not clear. Recently,…

Quantitative Methods · Quantitative Biology 2021-10-12 Seyednami Niyakan , Xiaoning Qian

This paper presents a federated learning (FL) approach to train an AI model for SARS-Cov-2 variant classification. We analyze the SARS-CoV-2 spike sequences in a distributed way, without data sharing, to detect different variants of this…

Machine Learning · Computer Science 2023-11-10 Prakash Chourasia , Taslim Murad , Zahra Tayebi , Sarwan Ali , Imdad Ullah Khan , Murray Patterson

The present work shows that it is possible to analytically solve a general model to explain the transmission dynamics of SARS-CoV-2. First, the within-host model is described, and later a between-host model, where the coupling between them…

Populations and Evolution · Quantitative Biology 2023-08-07 Raul Isea

As the COVID-19 pandemic continues to devastate globally, the use of chest X-ray (CXR) imaging as a complimentary screening strategy to RT-PCR testing continues to grow given its routine clinical use for respiratory complaint. As part of…

Image and Video Processing · Electrical Eng. & Systems 2021-05-17 Maya Pavlova , Naomi Terhljan , Audrey G. Chung , Andy Zhao , Siddharth Surana , Hossein Aboutalebi , Hayden Gunraj , Ali Sabri , Amer Alaref , Alexander Wong

Superspreading complicates the study of SARS-CoV-2 transmission. I propose a model for aggregated case data that accounts for superspreading and improves statistical inference. In a Bayesian framework, the model is estimated on German data…

Applications · Statistics 2020-11-10 Patrick W. Schmidt

The SARS CoV-2 virus emerged at the end of 2019 and rapidly developed several mutated variants, specifically the Delta and Omicron, which demonstrate higher infectivity and escalating infection cases worldwide. The dominant transmission…

Biological Physics · Physics 2022-02-25 Daniela Dobrynin , Iryna Polishchuk , Lotan Portal , Ivan Zlotver , Alejandro Sosnik , Boaz Pokroy

The clinical spectrum of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the strain of coronavirus that caused the COVID-19 pandemic, is broad, extending from asymptomatic infection to severe immunopulmonary reactions that, if…

Quantitative Methods · Quantitative Biology 2022-07-18 Aaron Wang , Feng Li , Samantha Chiang , Jennifer Fulcher , Otto Yang , David Wong , Fang Wei

Rapid antigen tests detect proteins at the surface of virus particles, identifying the disease during its infectious phase. In contrast, PCR tests detect viral genomes; they can thus diagnose COVID-19 before the infectious phase but also…

Populations and Evolution · Quantitative Biology 2022-01-21 Jitka Polechová , Kory D. Johnson , Pavel Payne , Alex Crozier , Mathias Beiglböck , Pavel Plevka , Eva Schernhammer

The new Coronavirus is spreading rapidly, and it has taken the lives of many people so far. The virus has destructive effects on the human lung, and early detection is very important. Deep Convolution neural networks are such powerful tools…

Image and Video Processing · Electrical Eng. & Systems 2021-10-06 Mohammad Saber Iraji , Mohammad-Reza Feizi-Derakhshi , Jafar Tanha

Understanding the viral dynamics and immunizing antibodies of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is crucial for devising better therapeutic and prevention strategies for COVID-19. Here, we present a Bayesian…

Applications · Statistics 2023-07-27 Tracy Q. Dong , Elizabeth R. Brown

Coronavirus (COVID-19) emerged towards the end of 2019. World Health Organization (WHO) was identified it as a global epidemic. Consensus occurred in the opinion that using Computerized Tomography (CT) techniques for early diagnosis of…

Image and Video Processing · Electrical Eng. & Systems 2020-04-09 Umut Ozkaya , Saban Ozturk , Mucahid Barstugan

The rapid evolution and global impact of coronaviruses, notably SARS-CoV-1 and SARS-CoV-2, underscore the importance of understanding their molecular mechanisms in detail. This study focuses on the receptor-binding motif (RBM) within the…

Biological Physics · Physics 2026-03-16 Rafael B. Frigori

Predicting the future evolutionary trajectory of SARS-CoV-2 remains a critical challenge, particularly due to the pivotal role of spike protein mutations. It is therefore essential to develop evolutionary models capable of continuously…

Quantitative Methods · Quantitative Biology 2025-10-06 Liaofu Luo , Jun Lv

The rapid emergence and the disastrous impact of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic on public health, societies, and economies around the world has created an urgent need for understanding the pathways…

Populations and Evolution · Quantitative Biology 2023-01-18 Sebastian Lotter , Lukas Brand , Maximilian Schäfer , Robert Schober

Airborne particles are the medium for SARS-CoV-2 to invade the human body. Light also reflects through suspended particles in the air, allowing people to see a colorful world. Impressionism is the most prominent art school that explores the…

Computer Vision and Pattern Recognition · Computer Science 2023-04-25 Yuan-Fu Yang , Iuan-Kai Fang , Min Sun , Su-Chu Hsu

We analyze the time series data of number of districts or cities in India that are affected by COVID-19 from March 01, 2020 to April 17, 2020. We study the data in the framework of time series network data. The networks are defined by using…

Social and Information Networks · Computer Science 2020-04-28 Pradumn Kumar Pandey , Bibhas Adhikari