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The increased availability and usage of modern medical imaging induced a strong need for automatic medical image segmentation. Still, current image segmentation platforms do not provide the required functionalities for plain setup of…

Image and Video Processing · Electrical Eng. & Systems 2022-04-14 Dominik Müller , Frank Kramer

We have developed PyTIE (Python Topological Indices Expressions) which is defined as the collections of Python packages such as PyTIE D, PyTIE DS, PyTIE SMS DE, and PyTIE SMS DSE, which are open-source software packages and cross-platform…

Chemical Physics · Physics 2025-11-03 Sahaya Vijay Jeyaraj , Roy S , Govardhan S , Tony Augustine , Jyothish K

We present Theseus, an efficient application-agnostic open source library for differentiable nonlinear least squares (DNLS) optimization built on PyTorch, providing a common framework for end-to-end structured learning in robotics and…

Deep learning technologies, particularly deep neural networks (DNNs), have demonstrated significant success across many domains. This success has been accompanied by substantial advancements and innovations in the algorithms behind the…

Machine Learning · Computer Science 2025-04-14 Timothy L. Cronin , Sanmukh Kuppannagari

Deep learning has brought significant advancements to X-ray Computed Tomography (CT) reconstruction, offering solutions to challenges arising from modern imaging technologies. These developments benefit from methods that combine classical…

Machine Learning · Computer Science 2025-11-12 Linda-Sophie Schneider , Yipeng Sun , Chengze Ye , Markus Michen , Andreas Maier

Electroencephalography (EEG) provides a non-invasive way to observe brain activity in real time. Deep learning has enhanced EEG analysis, enabling meaningful pattern detection for clinical and research purposes. However, most existing…

Artificial Intelligence · Computer Science 2025-07-03 Rabindra Khadka , Pedro G Lind , Anis Yazidi , Asma Belhadi

We present the application of a class of deep learning, known as Physics Informed Neural Networks (PINN), to learning and discovery in solid mechanics. We explain how to incorporate the momentum balance and constitutive relations into PINN,…

Machine Learning · Computer Science 2020-05-12 Ehsan Haghighat , Maziar Raissi , Adrian Moure , Hector Gomez , Ruben Juanes

A large scale collection of both semantic and natural language resources is essential to leverage active Software Engineering research areas such as code reuse and code comprehensibility. Existing machine learning models ingest data from…

Integrated information theory provides a mathematical framework to fully characterize the cause-effect structure of a physical system. Here, we introduce PyPhi, a Python software package that implements this framework for causal analysis…

Neurons and Cognition · Quantitative Biology 2018-08-16 William G. P. Mayner , William Marshall , Larissa Albantakis , Graham Findlay , Robert Marchman , Giulio Tononi

Practice and extensive exercises are essential in programming education. Intelligent tutoring systems (ITSs) are a viable option to provide individualized hints and advice to programming students even when human tutors are not available.…

Machine Learning · Computer Science 2026-04-20 Alina Deriyeva , Jesper Dannath , Benjamin Paassen

We present MADLens a python package for producing non-Gaussian lensing convergence maps at arbitrary source redshifts with unprecedented precision. MADLens is designed to achieve high accuracy while keeping computational costs as low as…

Cosmology and Nongalactic Astrophysics · Physics 2020-12-18 Vanessa Böhm , Yu Feng , Max E. Lee , Biwei Dai

Deep learning has shown great promise in physiological signal analysis, yet its progress is hindered by heterogeneous data formats, inconsistent preprocessing strategies, fragmented model pipelines, and non-reproducible experimental setups.…

Artificial Intelligence · Computer Science 2025-12-30 Tao Zhou , Lingyu Shu , Zixing Zhang , Jing Han

We introduce pymovements: a Python package for analyzing eye-tracking data that follows best practices in software development, including rigorous testing and adherence to coding standards. The package provides functionality for key…

SHallow REcurrent Decoders (SHRED) provide a deep learning strategy for modeling high-dimensional dynamical systems and/or spatiotemporal data from dynamical system snapshot observations. PySHRED is a Python package that implements SHRED…

Machine Learning · Computer Science 2025-07-29 David Ye , Jan Williams , Mars Gao , Stefano Riva , Matteo Tomasetto , David Zoro , J. Nathan Kutz

We introduce pyGSL, a Python library that provides efficient implementations of state-of-the-art graph structure learning models along with diverse datasets to evaluate them on. The implementations are written in GPU-friendly ways, allowing…

Machine Learning · Computer Science 2022-11-08 Max Wasserman , Gonzalo Mateos

Imbalanced-learn is an open-source python toolbox aiming at providing a wide range of methods to cope with the problem of imbalanced dataset frequently encountered in machine learning and pattern recognition. The implemented…

Machine Learning · Computer Science 2016-09-22 Guillaume Lemaitre , Fernando Nogueira , Christos K. Aridas

OpenMatch is a Python-based library that serves for Neural Information Retrieval (Neu-IR) research. It provides self-contained neural and traditional IR modules, making it easy to build customized and higher-capacity IR systems. In order to…

Information Retrieval · Computer Science 2021-05-07 Zhenghao Liu , Kaitao Zhang , Chenyan Xiong , Zhiyuan Liu , Maosong Sun

Correct performance assessment is crucial for evaluating modern artificial intelligence algorithms in medicine like deep-learning based medical image segmentation models. However, there is no universal metric library in Python for…

Computer Vision and Pattern Recognition · Computer Science 2022-01-25 Dominik Müller , Dennis Hartmann , Philip Meyer , Florian Auer , Iñaki Soto-Rey , Frank Kramer

Artificial intelligence (AI) is revolutionizing numerous fields, with increasing applications in Global Navigation Satellite Systems (GNSS) positioning algorithms in intelligent transportation systems (ITS) via deep learning. However, a…

Machine Learning · Computer Science 2024-09-23 Runzhi Hu , Penghui Xu , Yihan Zhong , Weisong Wen

Medical time-series data captures the dynamic progression of patient conditions, playing a vital role in modern clinical decision support systems. However, real-world clinical data is highly heterogeneous and inconsistently formatted.…

Machine Learning · Computer Science 2026-04-01 Zhongheng Jiang , Yuechao Zhao , Donglin Xie , Chenxi Sun , Rongchen Lu , Silu Luo , Zisheng Liang , Shenda Hong
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