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Hosting platforms for software projects can form collaborative social networks and a prime example of this is GitHub which is arguably the most popular platform of this kind. An open source project recommendation system could be a major…
We present SemRepo, an RDF knowledge graph comprising over 81 million triples describing nearly 200,000 GitHub repositories associated with scientific research. SemRepo captures repository-level metadata, such as contributors, issues, and…
An analysis of 2,765 articles published in four math journals from 1997 to 2005 indicate that articles deposited in the arXiv received 35% more citations on average than non-deposited articles (an advantage of about 1.1 citations per…
Computational reproducibility is fundamental to trustworthy science, yet remains difficult to achieve in practice across various research workflows, including Jupyter notebooks published alongside scholarly articles. Environment drift,…
Recent reproducibility case studies have raised concerns showing that much of the deposited research has not been reproducible. One of their conclusions was that the way data repositories store research data and code cannot fully facilitate…
Data sharing is fundamental to scientific progress, enhancing transparency, reproducibility, and innovation across disciplines. Despite its growing significance, the variability of data-sharing practices across research fields remains…
GitHub is one of the most widely used public code development platform. However, the code hosted publicly on the platform is vulnerable to commit spoofing that allows an adversary to introduce malicious code or commits into the repository…
Software development relies heavily on traceability links between various software artifacts to ensure quality and facilitate maintenance. While automated traceability recovery techniques have advanced for different artifact pairs, the…
With the urgent need to secure supply chains among Open Source libraries, attention has focused on mitigating vulnerabilities detected in these libraries. Although awareness has improved recently, most studies still report delays in the…
In this paper, we investigate the retrievability of datasets and publications in a real-life Digital Library (DL). The measure of retrievability was originally developed to quantify the influence that a retrieval system has on the access to…
Developers often struggle with maintaining GitHub Actions workflow configurations in GitHub-hosted repositories, with recent studies showing frequent execution failures. This paper empirically explores how the adoption and evolution of…
Approaches to scientific journal publishing that provide free access to all readers are challenging the standard subscription-based model. But in domains that have a well-functioning system of publicly accessible preprint repositories like…
Background: Open source software has an increasing importance in modern software development. However, there is also a growing concern on the sustainability of such projects, which are usually managed by a small number of developers,…
Biobanks advance biomedical and clinical research by collecting and offering data and biological samples for numerous studies. However, the impact of these repositories varies greatly due to differences in their purpose, scope, governance,…
Reproducibility is inseparable from transparency, as sharing data, code and computational environment is a pre-requisite for being able to retrace the steps of producing the research results. Others have made the case that this artifact…
The success of deep learning has sparked interest in improving relational table tasks, like data preparation and search, with table representation models trained on large table corpora. Existing table corpora primarily contain tables…
With an ever-increasing amount of open source software, the popularity of services like GitHub that facilitate code reuse, and common misconceptions about the licensing of open source software, the problem of license violations in the code…
Software quality is an important problem for technology companies, since it substantially impacts the efficiency, usefulness, and maintainability of the final product; hence, code review is a must-do activity for software developers. During…
Jupyter notebooks facilitate the bundling of executable code with its documentation and output in one interactive environment, and they represent a popular mechanism to document and share computational workflows. The reproducibility of…
Version control systems for source code, such as Git, are key tools in modern software development environments. Many developers use online services, such as GitHub or GitLab, for collaborative software development. While software projects…