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Machine learning of atomic-scale properties is revolutionizing molecular modelling, making it possible to evaluate inter-atomic potentials with first-principles accuracy, at a fraction of the costs. The accuracy, speed and reliability of…

Computational Physics · Physics 2018-10-16 Giulio Imbalzano , Andrea Anelli , Daniele Giofr é , Sinja Klees , J örg Behler , Michele Ceriotti

Network tomography is a crucial problem in network monitoring, where the observable path performance metric values are used to infer the unobserved ones, making it essential for tasks such as route selection, fault diagnosis, and traffic…

Machine Learning · Computer Science 2025-02-25 Yuntong Hu , Junxiang Wang , Liang Zhao

Predicting the structure of multi-protein complexes is a grand challenge in biochemistry, with major implications for basic science and drug discovery. Computational structure prediction methods generally leverage pre-defined structural…

Biomolecules · Quantitative Biology 2021-01-26 Stephan Eismann , Raphael J. L. Townshend , Nathaniel Thomas , Milind Jagota , Bowen Jing , Ron O. Dror

We propose the Poisson neural networks (PNNs) to learn Poisson systems and trajectories of autonomous systems from data. Based on the Darboux-Lie theorem, the phase flow of a Poisson system can be written as the composition of (1) a…

Machine Learning · Computer Science 2020-12-08 Pengzhan Jin , Zhen Zhang , Ioannis G. Kevrekidis , George Em Karniadakis

Originating in quantum physics, tensor networks (TNs) have been widely adopted as exponential machines and parameter decomposers for recognition tasks. Typical TN models, such as Matrix Product States (MPS), have not yet achieved successful…

Computer Vision and Pattern Recognition · Computer Science 2025-02-17 Chang Nie , Junfang Chen , Yajie Chen

We develop random graph models where graphs are generated by connecting not only pairs of vertices by edges but also larger subsets of vertices by copies of small atomic subgraphs of arbitrary topology. This allows the for the generation of…

Statistics Theory · Mathematics 2021-04-21 Anatol E. Wegner , Sofia Olhede

Most state-of-the-art neural network potentials do not account for molecular attributes other than atomic numbers and positions, which limits its range of applicability by design. In this work, we demonstrate the importance of including…

Machine Learning · Computer Science 2025-02-10 Guillem Simeon , Antonio Mirarchi , Raul P. Pelaez , Raimondas Galvelis , Gianni De Fabritiis

Disorder in condensed matter and atomic physics is responsible for a great variety of fascinating quantum phenomena, which are still challenging for understanding, not to mention the relevant dynamical control. Here we introduce proof of…

Disordered Systems and Neural Networks · Physics 2022-03-01 Tang-You Huang , Yue Ban , E. Ya. Sherman , Xi Chen

The representation of atomic configurations for machine learning models has led to the development of numerous descriptors, often to describe the local environment of atoms. However, many of these representations are incomplete and/or…

Chemical Physics · Physics 2025-04-04 Alice E. A. Allen , Emily Shinkle , Roxana Bujack , Nicholas Lubbers

Deep neural networks have excelled on a wide range of problems, from vision to language and game playing. Neural networks very gradually incorporate information into weights as they process data, requiring very low learning rates. If the…

As humans, we inherently perceive images based on their predominant features, and ignore noise embedded within lower bit planes. On the contrary, Deep Neural Networks are known to confidently misclassify images corrupted with meticulously…

Computer Vision and Pattern Recognition · Computer Science 2020-04-02 Sravanti Addepalli , Vivek B. S. , Arya Baburaj , Gaurang Sriramanan , R. Venkatesh Babu

How can we design neural networks that allow for stable universal approximation of maps between topologically interesting manifolds? The answer is with a coordinate projection. Neural networks based on topological data analysis (TDA) use…

Machine Learning · Computer Science 2022-10-04 Michael Puthawala , Matti Lassas , Ivan Dokmanic , Pekka Pankka , Maarten de Hoop

Physics-informed neural networks approach the approximation of differential equations by directly incorporating their structure and given conditions in a loss function. This enables conditions like, e.g., invariants to be easily added…

Machine Learning · Computer Science 2025-08-20 Santosh Humagain , Toni Schneidereit

Current deep neural networks are highly overparameterized (up to billions of connection weights) and nonlinear. Yet they can fit data almost perfectly through variants of gradient descent algorithms and achieve unexpected levels of…

Molecular representation learning has attracted much attention recently. A molecule can be viewed as a 2D graph with nodes/atoms connected by edges/bonds, and can also be represented by a 3D conformation with 3-dimensional coordinates of…

Machine Learning · Computer Science 2022-07-20 Jinhua Zhu , Yingce Xia , Lijun Wu , Shufang Xie , Tao Qin , Wengang Zhou , Houqiang Li , Tie-Yan Liu

Learning monotonic models with respect to a subset of the inputs is a desirable feature to effectively address the fairness, interpretability, and generalization issues in practice. Existing methods for learning monotonic neural networks…

Machine Learning · Computer Science 2022-12-16 Xingchao Liu , Xing Han , Na Zhang , Qiang Liu

Place classification is a fundamental ability that a robot should possess to carry out effective human-robot interactions. It is a nontrivial classification problem which has attracted many research. In recent years, there is a high…

Robotics · Computer Science 2015-06-15 Yiyi Liao , Sarath Kodagoda , Yue Wang , Lei Shi , Yong Liu

Machine learning (ML) based interatomic potentials have transformed the field of atomistic materials modelling. However, ML potentials depend critically on the quality and quantity of quantum-mechanical reference data with which they are…

Computational Physics · Physics 2023-08-01 John L. A. Gardner , Kathryn T. Baker , Volker L. Deringer

An autoencoder (AE) and a generative adversarial networks (GANs) are trained only once on a one-dimensional (1D) lattice of 200 sites. Moreover, the AE contains only one hidden layer consisting of two neurons and both the generator and the…

Disordered Systems and Neural Networks · Physics 2022-05-19 Y. -H. Yseng , F. -J. Jiang , C. -Y. Huang

The local arrangement of atoms is one of the most important predictors of mechanical and functional properties of materials. However, algorithms for identifying the geometrical arrangements of atoms in complex materials systems are lacking.…

Materials Science · Physics 2019-04-15 Arash Dehghan Banadaki , Jason J. Maldonis , Paul M. Voyles , Srikanth Patala