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Progress in science is deeply bound to the effective use of high-performance computing infrastructures and to the efficient extraction of knowledge from vast amounts of data. Such data comes from different sources that follow a cycle…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-15 Rosa M Badia , Jorge Ejarque , Francesc Lordan , Daniele Lezzi , Javier Conejero , Javier Álvarez Cid-Fuentes , Yolanda Becerra , Anna Queralt

Functional materials that enable many technological applications in our everyday lives owe their unique properties to defects that are carefully engineered and incorporated into these materials during processing. However, optimizing and…

Materials Science · Physics 2023-03-23 Sokseiha Muy , Conrad Johnston , Nicola Marzari

Advances in sequencing techniques have led to exponential growth in biological data, demanding the development of large-scale bioinformatics experiments. Because these experiments are computation- and data-intensive, they require…

Modern AI systems are complex workflows containing multiple components and data sources. Data provenance provides the ability to interrogate and potentially explain the outputs of these systems. However, provenance is often too detailed and…

Human-Computer Interaction · Computer Science 2025-07-25 Jan-Christoph Kalo , Fina Polat , Shubha Guha , Paul Groth

Agentic workflows in large language model systems integrate retrieval, reasoning, and memory, but existing frameworks suffer from scalability and reproducibility limitations due to fragmented data orchestration, serialization overhead, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-05 Arup Kumar Sarker , Mills Staylor , Aymen Alsaadi , Gregor von Laszewski , Shantenu Jha , Geoffrey Fox

Trusting simulation output is crucial for Sandia's mission objectives. We rely on these simulations to perform our high-consequence mission tasks given national treaty obligations. Other science and modeling applications, while they may…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-13 Jay Lofstead , Joshua Baker , Andrew Younge

This white paper, developed through close collaboration between IBM Research and UIUC researchers within the IIDAI Institute, envisions transforming hybrid cloud systems to meet the growing complexity of AI workloads through innovative,…

Artificial Intelligence (AI) is a fast-growing research and development (R&D) discipline which is attracting increasing attention because of its promises to bring vast benefits for consumers and businesses, with considerable benefits…

Artificial Intelligence · Computer Science 2022-05-10 Zhenghua Chen , Min Wu , Alvin Chan , Xiaoli Li , Yew-Soon Ong

In the world of science new technology have opened up the possibility to rely on advanced computational methods and models to conduct and produce scientific research. An important aspect of scientific and business workflows is provenance -…

Software Engineering · Computer Science 2025-04-01 Ludwig Stage , Julia Dahlberg , Dimka Karastoyanova

Study reproducibility is essential to corroborate, build on, and learn from the results of scientific research but is notoriously challenging in bioinformatics, which often involves large data sets and complex analytic workflows involving…

Quantitative Methods · Quantitative Biology 2023-05-22 Christopher R. Keefe , Matthew R. Dillon , Chloe Herman , Mary Jewell , Colin V. Wood , Evan Bolyen , J. Gregory Caporaso

Open-source AI is scaling rapidly, and model hubs now host millions of artifacts. Each foundation model can spawn large numbers of fine-tunes, adapters, quantizations, merges, and forks. We take the position that compute efficiency alone is…

Emerging Technologies · Computer Science 2026-05-06 Shaina Raza , Iuliia Zarubiieva , Ahmed Y. Radwan , Nate Lesperance , Deval Pandya , Sedef Akinli Kocak , Graham W. Taylor

Computational workflows are a common class of application on supercomputers, yet the loosely coupled and heterogeneous nature of workflows often fails to take full advantage of their capabilities. We created Colmena to leverage the massive…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-27 Logan Ward , J. Gregory Pauloski , Valerie Hayot-Sasson , Yadu Babuji , Alexander Brace , Ryan Chard , Kyle Chard , Rajeev Thakur , Ian Foster

Artificial Intelligence (AI) systems are increasingly dependent on complex, multi-layered software supply chains that introduce challenges for reproducibility, transparency, and security assurance. This study presents an Artificial…

Software Engineering · Computer Science 2026-05-20 Petar Radanliev , Omar Santos , Carsten Maple , Kay Atefi

Computational reproducibility is central to scientific credibility, yet verifying published results at scale remains costly. We develop an AI-assisted workflow for automated full-paper replication -- retrieving materials, reconstructing…

Econometrics · Economics 2026-03-27 Yiqing Xu , Leo Yang Yang

Numerical algorithms and computational tools are instrumental in navigating and addressing complex simulation and data processing tasks. The exponential growth of metadata and parameter-driven simulations has led to an increasing demand for…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-02 Pavan L. Veluvali , Jan Heiland , Peter Benner

Reproducibility and sustainability present significant challenges in bioinformatics software development, where rapidly evolving tools and complex workflows often result in short-lived or difficult-to-adapt pipelines. This paper introduces…

Software Engineering · Computer Science 2025-05-07 Marco Masera , Alessandro Leone , Johannes Köster , Ivan Molineris

Scientists rely on simulations to study natural phenomena. Trusting the simulation results is vital to develop sciences in any field. One approach to build trust is to ensure the reproducibility and traceability of the simulations through…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-21 Paula Olaya , Jay Lofstead , Michela Taufer

The real-time deployment of cascaded generative AI pipelines for applications like video translation is constrained by significant system-level challenges. These include the cumulative latency of sequential model inference and the quadratic…

Multimedia · Computer Science 2025-12-17 Amirkia Rafiei Oskooei , Eren Caglar , Ibrahim Sahin , Ayse Kayabay , Mehmet S. Aktas

Researchers have been highly active to investigate the classical machine learning workflow and integrate best practices from the software engineering lifecycle. However, deep learning exhibits deviations that are not yet covered in this…

Software Engineering · Computer Science 2022-08-30 Janosch Baltensperger , Pasquale Salza , Harald C. Gall

Modern scientific discovery increasingly relies on workflows that process data across the Edge, Cloud, and High Performance Computing (HPC) continuum. Comprehensive and in-depth analyses of these data are critical for hypothesis validation,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-24 Renan Souza , Timothy Poteet , Brian Etz , Daniel Rosendo , Amal Gueroudji , Woong Shin , Prasanna Balaprakash , Rafael Ferreira da Silva