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Towards the end of an infectious disease outbreak, when a period has elapsed without new case notifications, a key question for public health policy makers is whether the outbreak can be declared over. This requires the benefits of a…

Populations and Evolution · Quantitative Biology 2025-08-22 M. J. Plank , W. S. Hart , J. Polonsky , M. Keita , S. Ahuka-Mundeke , R. N. Thompson

Different ways of calculating mortality ratios during epidemics have yielded very different results, particularly during the current COVID-19 pandemic. We formulate both a survival probability model and an associated infection…

Populations and Evolution · Quantitative Biology 2020-10-06 Lucas Böttcher , Mingtao Xia , Tom Chou

It is crucial for policymakers to understand the community prevalence of COVID-19 so combative resources can be effectively allocated and prioritized during the COVID-19 pandemic. Traditionally, community prevalence has been assessed…

The COVID-19 pandemic represents the most significant public health disaster since the 1918 influenza pandemic. During pandemics such as COVID-19, timely and reliable spatio-temporal forecasting of epidemic dynamics is crucial. Deep…

Machine Learning · Computer Science 2020-11-25 Lijing Wang , Aniruddha Adiga , Srinivasan Venkatramanan , Jiangzhuo Chen , Bryan Lewis , Madhav Marathe

Forecasting models have been influential in shaping decision-making in the COVID-19 pandemic. However, there is concern that their predictions may have been misleading. Here, we dissect the predictions made by four models for the daily…

Populations and Evolution · Quantitative Biology 2020-08-12 Vincent Chin , Noelle I. Samia , Roman Marchant , Ori Rosen , John P. A. Ioannidis , Martin A. Tanner , Sally Cripps

We study the increases of infections and deaths in Sweden caused by COVID-19 with several different models: Firstly an analytical susceptible-infected (SI) model and the standard susceptible-infected-recovered (SIR) model. Then within the…

Populations and Evolution · Quantitative Biology 2020-04-06 Chong Qi , Daniel Karlsson , Karl Sallmen , Ramon Wyss

Since the beginning of March 2020, the cumulative numbers of cases of infection with the novel coronavirus SARS-CoV-2 in Germany have been reported on a daily basis. The reports originate from national laws, according to which positive test…

Populations and Evolution · Quantitative Biology 2020-05-08 Ralph Brinks , Annika Hoyer

Factors such as non-uniform definitions of mortality, uncertainty in disease prevalence, and biased sampling complicate the quantification of fatality during an epidemic. Regardless of the employed fatality measure, the infected population…

Quantitative Methods · Quantitative Biology 2021-12-28 Lucas Böttcher , Maria D'Orsogna , Tom Chou

The recent global outbreak of covid-19 is affecting many countries around the world. Due to the growing number of newly infected individuals and the health-care system bottlenecks, it will be useful to predict the upcoming number of…

Machine Learning · Computer Science 2021-03-18 Jafar Abdollahi , Amir Jalili Irani , Babak Nouri-Moghaddam

Norden E. Huang, Fangli Qiao and Ka Kit Tung presented a data-driven model for the COVID-19 epidemic in which the relevant functions depend on a set of seven parameters obtained from a statistical analysis of the available data. These…

Physics and Society · Physics 2020-08-17 Charles Horvath

The novel coronavirus SARS-CoV-2 and resulting COVID-19 disease have had an unprecedented spread and continue to cause an increasing number of fatalities worldwide. While vaccines are still under development, social distancing, extensive…

Populations and Evolution · Quantitative Biology 2020-07-02 Calvin Tsay , Fernando Lejarza , Mark A. Stadtherr , Michael Baldea

We propose a detailed discrete-time model of COVID-19 epidemics coming in two flavours, mean-field and probabilistic. The main contribution lies in several extensions of the basic model that capture i) user mobility - distinguishing…

Applications · Statistics 2020-09-14 M. Akian , L. Ganassali , S. Gaubert , L. Massoulié

As the COVID-19 outbreak evolves around the world, the World Health Organization (WHO) and its Member States have been heavily relying on staying at home and lock down measures to control the spread of the virus. In the last months, various…

Physics and Society · Physics 2020-12-25 Anna Schmedding , Lishan Yang , Riccardo Pinciroli , Evgenia Smirni

With COVID-19 now pervasive, identification of high-risk individuals is crucial. Using data from a major healthcare provider in Southwestern Pennsylvania, we develop survival models predicting severe COVID-19 progression. In this endeavor,…

Machine Learning · Computer Science 2022-08-30 Helen Zhou , Cheng Cheng , Kelly J. Shields , Gursimran Kochhar , Tariq Cheema , Zachary C. Lipton , Jeremy C. Weiss

The COVID-19 pandemic has, worldwide and up to December 2020, caused over 1.7 million deaths, and put the world's most advanced healthcare systems under heavy stress. In many countries, drastic restrictive measures adopted by political…

Signal Processing · Electrical Eng. & Systems 2023-01-18 Giovanni Soldi , Nicola Forti , Domenico Gaglione , Paolo Braca , Leonardo M. Millefiori , Stefano Marano , Peter Willett , Krishna Pattipati

The primary goal of this research is to investigate the impact of delay on the dynamics of the Susceptible-Exposed-Infected-Recovered-Death and Susceptible (SEIRDS) model, to which we add a stochastic term to account for uncertainty in…

Populations and Evolution · Quantitative Biology 2022-08-17 Mohamed Ben Alaya , Walid Ben Aribi , Slimane Ben Miled

We develop a novel hybrid epidemiological model and a specific methodology for its calibration to distinguish and assess the impact of mobility restrictions (given by Apple's mobility trends data) from other complementary non-pharmaceutical…

Populations and Evolution · Quantitative Biology 2020-09-30 Victor Hugo Grisales Diaz , Oscar Andres Prado-Rubio , Mark J. Willis

An urgent problem in controlling COVID-19 spreading is to understand the role of undocumented infection. We develop a five-state model for COVID-19, taking into account the unique features of the novel coronavirus, with key parameters…

Populations and Evolution · Quantitative Biology 2020-03-27 Yong-Shang Long , Zheng-Meng Zhai , Li-Lei Han , Jie Kang , Yi-Lin Li , Zhao-Hua Lin , Lang Zeng , Da-Yu Wu , Chang-Qing Hao , Ming Tang , Zonghua Liu , Ying-Cheng Lai

The discovery of SARS-CoV-2, the responsible virus for the Covid-19 epidemic, has sparked a global health concern with many countries affected. Developing models that can interpret the epidemic and give common trend parameters are useful…

Populations and Evolution · Quantitative Biology 2021-09-21 Milad Radiom , Jean-Franccois Berret

In India the COVID-19 infected population has not yet been accurately established. As always in the early stages of any epidemic, the need to test serious cases first has meant that the population with asymptomatic or mild sub-clinical…

Populations and Evolution · Quantitative Biology 2020-04-09 Sourendu Gupta , R. Shankar
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