English
Related papers

Related papers: Learning to Reconstruct Confocal Microscopy Stacks…

200 papers

Deep learning methods have witnessed the great progress in image restoration with specific metrics (e.g., PSNR, SSIM). However, the perceptual quality of the restored image is relatively subjective, and it is necessary for users to control…

Computer Vision and Pattern Recognition · Computer Science 2019-08-21 Wei Wang , Ruiming Guo , Yapeng Tian , Wenming Yang

We present a numerically efficient method to reconstruct a disordered network of thin biopolymers, such as collagen gels, from three-dimensional (3D) image stacks recorded with a confocal microscope. Our method is based on a template…

Quantitative Methods · Quantitative Biology 2011-11-17 Patrick Krauss , Claus Metzner , Janina Lange , Nadine Lang , Ben Fabry

High-resolution 3D medical images are important for analysis and diagnosis, but axial scanning to acquire them is very time-consuming. In this paper, we propose a fast end-to-end multi-focal plane imaging network (MFPINet) to reconstruct…

Image and Video Processing · Electrical Eng. & Systems 2020-09-22 Jiabo Ma , Sibo Liu , Shenghua Cheng , Xiuli Liu , Li Cheng , Shaoqun Zeng

Reconstructing 3D cone beam computed tomography (CBCT) images from a limited set of projections is an important inverse problem in many imaging applications from medicine to inertial confinement fusion (ICF). The performance of traditional…

Image and Video Processing · Electrical Eng. & Systems 2025-10-06 Xiaojian Xu , Marc Klasky , Michael T. McCann , Jason Hu , Jeffrey A. Fessler

\ac{fl} proposed a distributed \ac{ml} framework where every distributed worker owns a complete copy of global model and their own data. The training is occurred locally, which assures no direct transmission of training data. However, the…

Cryptography and Security · Computer Science 2021-11-08 Jia Qian , Hiba Nassar , Lars Kai Hansen

Reconstructing the detailed geometric structure of a face from a given image is a key to many computer vision and graphics applications, such as motion capture and reenactment. The reconstruction task is challenging as human faces vary…

Computer Vision and Pattern Recognition · Computer Science 2017-04-07 Elad Richardson , Matan Sela , Roy Or-El , Ron Kimmel

Deep Learning (DL) based Compressed Sensing (CS) has been applied for better performance of image reconstruction than traditional CS methods. However, most existing DL methods utilize the block-by-block measurement and each measurement…

Image and Video Processing · Electrical Eng. & Systems 2022-09-29 Zhifeng Wang , Zhenghui Wang , Chunyan Zeng , Yan Yu , Xiangkui Wan

Existing deep learning methods in multimode fiber (MMF) imaging often focus on simpler datasets, limiting their applicability to complex, real-world imaging tasks. These models are typically data-intensive, a challenge that becomes more…

Computer Vision and Pattern Recognition · Computer Science 2025-11-26 Jawaria Maqbool , M. Imran Cheema

Reconstructing multiple molecularly defined neurons from individual brains and across multiple brain regions can reveal organizational principles of the nervous system. However, high resolution imaging of the whole brain is a technically…

Computer Vision and Pattern Recognition · Computer Science 2019-03-19 James Gornet , Kannan Umadevi Venkataraju , Arun Narasimhan , Nicholas Turner , Kisuk Lee , H. Sebastian Seung , Pavel Osten , Uygar Sümbül

Confocal microscopy is the standard approach for obtaining volumetric images of a sample with high axial and lateral resolution, especially when dealing with scattering samples. Unfortunately, a confocal microscope is quite expensive…

Deep learning and convolutional neural networks (ConvNets) have been successfully applied to most relevant tasks in the computer vision community. However, these networks are computationally demanding and not suitable for embedded devices…

Computer Vision and Pattern Recognition · Computer Science 2016-06-20 Jose Alvarez , Lars Petersson

We have developed a convolutional neural network (CNN) to reconstruct the shape of irregular rough particles from their interferometric images. The CNN is based on a UNET architecture with residual block modules. The database has been…

Computer Vision and Pattern Recognition · Computer Science 2024-08-08 Alexis Abad , Alexandre Poux , Alexis Boulet , Marc Brunel

Sparse-view cone-beam CT (CBCT) reconstruction is an important direction to reduce radiation dose and benefit clinical applications. Previous voxel-based generation methods represent the CT as discrete voxels, resulting in high memory…

Image and Video Processing · Electrical Eng. & Systems 2023-09-01 Yiqun Lin , Zhongjin Luo , Wei Zhao , Xiaomeng Li

Most existing methods for depth estimation from a focal stack of images employ convolutional neural networks (CNNs) using 2D or 3D convolutions over a fixed set of images. However, their effectiveness is constrained by the local properties…

Computer Vision and Pattern Recognition · Computer Science 2024-12-05 Xueyang Kang , Fengze Han , Abdur R. Fayjie , Patrick Vandewalle , Kourosh Khoshelham , Dong Gong

Object segmentation and structure localization are important steps in automated image analysis pipelines for microscopy images. We present a convolution neural network (CNN) based deep learning architecture for segmentation of objects in…

Computer Vision and Pattern Recognition · Computer Science 2019-01-24 Shan E Ahmed Raza , Linda Cheung , Muhammad Shaban , Simon Graham , David Epstein , Stella Pelengaris , Michael Khan , Nasir M. Rajpoot

Undersampling the k-space data is widely adopted for acceleration of Magnetic Resonance Imaging (MRI). Current deep learning based approaches for supervised learning of MRI image reconstruction employ real-valued operations and…

Computer Vision and Pattern Recognition · Computer Science 2018-07-11 Muneer Ahmad Dedmari , Sailesh Conjeti , Santiago Estrada , Phillip Ehses , Tony Stöcker , Martin Reuter

We present a direct method for limited angle tomographic reconstruction using convolutional networks. The key to our method is to first stretch every tilt view in the direction perpendicular to the tilt axis by the secant of the tilt angle.…

Image and Video Processing · Electrical Eng. & Systems 2023-06-21 Kyle Luther , Sebastian Seung

Many applications in computational and experimental fluid mechanics require effective methods for reconstructing the flow fields from limited sensor data. However, this task remains a significant challenge because the measurement operator,…

Fluid Dynamics · Physics 2024-11-22 Phong C. H. Nguyen , Joseph B. Choi , Quang-Trung Luu

The acquisition of Magnetic Resonance Imaging (MRI) is inherently slow. Inspired by recent advances in deep learning, we propose a framework for reconstructing MR images from undersampled data using a deep cascade of convolutional neural…

Computer Vision and Pattern Recognition · Computer Science 2017-03-03 Jo Schlemper , Jose Caballero , Joseph V. Hajnal , Anthony Price , Daniel Rueckert

Recently, 3D face reconstruction from a single image has achieved great success with the help of deep learning and shape prior knowledge, but they often fail to produce accurate geometry details. On the other hand, photometric stereo…

Computer Vision and Pattern Recognition · Computer Science 2020-03-30 Xueying Wang , Yudong Guo , Bailin Deng , Juyong Zhang