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Software is the key crosscutting technology that enables advances in mathematics, computer science, and domain-specific science and engineering to achieve robust simulations and analysis for science, engineering, and other research fields.…

Software is an essential component of research. However, little attention has been paid to it compared with that paid to research data. Recently, there has been an increase in efforts to acknowledge and highlight the importance of software…

Software Engineering · Computer Science 2025-10-07 Eva Martín del Pico , Josep Lluís Gelpí , Salvador Capella-Gutiérrez

The performance of applications, such as personal assistants and search engines, relies on high-quality knowledge bases, a.k.a. Knowledge Graphs (KGs). To ensure their quality one important task is knowledge validation, which measures the…

Databases · Computer Science 2021-11-29 Elwin Huaman , Amar Tauqeer , Anna Fensel

Scientific open-source software (Sci-OSS) projects are critical for advancing research, yet sustaining these projects long-term remains a major challenge. This paper explores the sustainability of Sci-OSS hosted on GitHub, focusing on two…

Software Engineering · Computer Science 2025-11-12 Sharif Ahmed , Addi Malviya Thakur , Gregory R. Watson , Nasir U. Eisty

The main output of the FORCE11 Software Citation working group (https://www.force11.org/group/software-citation-working-group) was a paper on software citation principles (https://doi.org/10.7717/peerj-cs.86) published in September 2016.…

Papers, patents, and clinical trials are essential scientific resources in biomedicine, crucial for knowledge sharing and dissemination. However, these documents are often stored in disparate databases with varying management standards and…

Digital Libraries · Computer Science 2025-06-19 Jian Xu , Chao Yu , Jiawei Xu , Vetle I. Torvik , Jaewoo Kang , Mujeen Sung , Min Song , Yi Bu , Ying Ding

The proliferation of open knowledge graphs has led to a surge in scholarly research on the topic over the past decade. This paper presents a bibliometric analysis of the scholarly literature on open knowledge graphs published between 2013…

We examined software usage in a sample set of astrophysics research articles published in 2015 and searched for source code for the software mentioned in these research papers. We categorized the software to indicate whether source code is…

Instrumentation and Methods for Astrophysics · Physics 2018-05-23 Alice Allen , Peter J. Teuben , P. Wesley Ryan

Knowledge Graphs (KGs) and their machine learning counterpart, Knowledge Graph Embedding Models (KGEMs), have seen ever-increasing use in a wide variety of academic and applied settings. In particular, KGEMs are typically applied to KGs to…

Machine Learning · Computer Science 2024-12-16 Jeffrey Sardina , John D. Kelleher , Declan O'Sullivan

Evaluating the open-form textual responses generated by Large Language Models (LLMs) typically requires measuring the semantic similarity of the response to a (human generated) reference. However, there is evidence that current semantic…

Artificial Intelligence · Computer Science 2025-11-26 Qiyao Wei , Edward Morrell , Lea Goetz , Mihaela van der Schaar

Practices in the built environment have become more digitalized with the rapid development of modern design and construction technologies. However, the requirement of practitioners or scholars to gather complicated professional knowledge in…

Computation and Language · Computer Science 2022-11-08 Xiaojun Yang , Haoyu Zhong , Penglin Du , Keyi Zhou , Xingjin Lai , Zhengdong Wang , Yik Lun Lau , Yangqiu Song , Liyaning Tang

Identifying and predicting the factors that contribute to the success of interdisciplinary research is crucial for advancing scientific discovery. However, there is a lack of methods to quantify the integration of new ideas and…

Instrumentation and Methods for Astrophysics · Physics 2024-06-18 Zechang Sun , Yuan-Sen Ting , Yaobo Liang , Nan Duan , Song Huang , Zheng Cai

This paper aims to tackle the challenge posed by the increasing integration of software tools in research across various disciplines by investigating the application of Falcon-7b for the detection and classification of software mentions…

Machine Learning · Computer Science 2024-05-15 AmeerAli Khan , Qusai Ramadan , Cong Yang , Zeyd Boukhers

In the social sciences, researchers search for information on the Web, but this is most often distributed on different websites, search portals, digital libraries, data archives, and databases. In this work, we present an integrated search…

Digital Libraries · Computer Science 2019-09-25 Daniel Hienert , Dagmar Kern , Katarina Boland , Benjamin Zapilko , Peter Mutschke

We report on the state-of-the-art of software visualization. To ensure reproducibility, we adopted the Systematic Literature Review methodology. That is, we analyzed 1440 entries from IEEE Xplore and ACM Digital Library databases. We…

Software Engineering · Computer Science 2020-06-23 Noptanit Chotisarn , Leonel Merino , Xu Zheng , Supaporn Lonapalawong , Tianye Zhang , Mingliang Xu , Wei Chen

The Web is our primary source of all kinds of information today. This includes information about software as well as associated materials, like source code, documentation, related publications and change logs. Such data is of particular…

Digital Libraries · Computer Science 2017-02-07 Helge Holzmann , Mila Runnwerth , Wolfram Sperber

Sustainable Development Goals (SDGs) bring together the diverse development community and provide a clear set of development targets for 2030. Given a large number of actors and initiatives related to these goals, there is a need to have a…

Digital Libraries · Computer Science 2020-06-01 Lukas Pukelis , Nuria Bautista Puig , Mykola Skrynik , Vilius Stanciauskas

In light of recent legal allegations brought by publishers, newspapers, and other creators of copyrighted corpora against large language model developers who use their copyrighted materials for training or fine-tuning purposes, we propose a…

Computation and Language · Computer Science 2024-08-05 Devam Mondal , Carlo Lipizzi

Biomedical knowledge graphs (KGs) hold rich information on entities such as diseases, drugs, and genes. Predicting missing links in these graphs can boost many important applications, such as drug design and repurposing. Recent work has…

Computation and Language · Computer Science 2021-09-22 Rahul Nadkarni , David Wadden , Iz Beltagy , Noah A. Smith , Hannaneh Hajishirzi , Tom Hope

Different communities rely heavily on software, but use quite different software development practices. {\bf Objective}: We wanted to measure the state of the practice in the area of statistical software for psychology to understand how it…

Software Engineering · Computer Science 2018-02-22 Spencer Smith , Yue Sun , Jacques Carette