Related papers: A CSP implementation of the directed bigraph embed…
Typical deep clustering methods, while achieving notable progress, can only provide one clustering result per dataset. This limitation arises from their assumption of a fixed underlying data distribution, which may fail to meet user needs…
This paper provides an overview of the current landscape of signal processing (SP) on directed graphs (digraphs). Directionality is inherent to many real-world (information, transportation, biological) networks and it should play an…
An increasing amount of digital music is being published daily. Music streaming services often ingest all available music, but this poses a challenge: how to recommend new artists for which prior knowledge is scarce? In this work we aim to…
We present a novel graph embedding space (i.e., a set of measures on graphs) for performing statistical analyses of networks. Key improvements over existing approaches include discovery of "motif-hubs" (multiple overlapping significant…
Modelling information from complex systems such as humans social interaction or words co-occurrences in our languages can help to understand how these systems are organized and function. Such systems can be modelled by networks, and network…
The algebraic approach to the Constraint Satisfaction Problem (CSP) uses high order symmetries of relational structures -- polymorphisms -- to study the complexity of the CSP. In this paper we further develop one of the methods the…
We study the weighted induced bipartite subgraph problem (WIBSP). The goal of WIBSP is, given a graph and nonnegative weights for the nodes, to find a set W of nodes with the maximum total weight such that a subgraph induced by W is…
We propose a novel Riemannian method for solving the Extreme multi-label classification problem that exploits the geometric structure of the sparse low-dimensional local embedding models. A constrained optimization problem is formulated as…
We compare alternative computing strategies for solving the constrained lasso problem. As its name suggests, the constrained lasso extends the widely-used lasso to handle linear constraints, which allow the user to incorporate prior…
Many common graph data mining tasks take the form of identifying dense subgraphs (e.g. clustering, clique-finding, etc). In biological applications, the natural model for these dense substructures is often a complete bipartite graph…
Constraint Satisfaction Problem (CSP) is a fundamental algorithmic problem that appears in many areas of Computer Science. It can be equivalently stated as computing a homomorphism $\mbox{$\bR \rightarrow \bGamma$}$ between two relational…
We introduce an efficient message passing scheme for solving Constraint Satisfaction Problems (CSPs), which uses stochastic perturbation of Belief Propagation (BP) and Survey Propagation (SP) messages to bypass decimation and directly…
Subgraph matching is the problem of finding all the occurrences of a small graph, called the query, in a larger graph, called the target. Although the problem has been widely studied in simple graphs, few solutions have been proposed for…
Mixed communities of organisms are found in many environments (from the human gut to marine ecosystems) and can have profound impact on human health and the environment. Metagenomics studies the genomic material of such communities through…
Every Constraint Programming (CP) solver exposes a library of constraints for solving combinatorial problems. In order to be useful, CP solvers need to be bug-free. Therefore the testing of the solver is crucial to make developers and users…
Densest Subgraph Problem (DSP) is an important primitive problem with a wide range of applications, including fraud detection, community detection and DNA motif discovery. Edge-based density is one of the most common metrics in DSP.…
Benders decomposition is a widely used method for solving large optimization problems, but its performance is often hindered by the repeated solution of subproblems. We propose a flexible and modular algorithmic framework for accelerating…
In this paper we focus on the following constrained reachability problem over edge-labeled graphs like RDF -- "given source node x, destination node y, and a sequence of edge labels (a, b, c, d), is there a path between the two nodes such…
Butterfly minors are a generalisation of the minor containment relation for undirected graphs to directed graphs. Many results in directed structural graph theory use this notion as a central tool next to directed treewidth, a…
In this paper, we present a novel way to summarize the structure of large graphs, based on non-parametric estimation of edge density in directed multigraphs. Following coclustering approach, we use a clustering of the vertices, with a…