English
Related papers

Related papers: Non-backtracking walks reveal compartments in spar…

200 papers

Consider the community detection problem in random hypergraphs under the non-uniform hypergraph stochastic block model (HSBM), where each hyperedge appears independently with some given probability depending only on the labels of its…

Statistics Theory · Mathematics 2024-08-29 Ioana Dumitriu , Haixiao Wang

The stochastic block model (SBM) is a fundamental model for studying graph clustering or community detection in networks. It has received great attention in the last decade and the balanced case, i.e., assuming all clusters have large size,…

Machine Learning · Computer Science 2023-10-24 Chandra Sekhar Mukherjee , Pan Peng , Jiapeng Zhang

Chromosome capture techniques like Hi-C have expanded our understanding of mammalian genome 3D architecture and how it influences gene activity. To analyze Hi-C data sets, researchers increasingly treat them as DNA-contact networks and use…

Biological Physics · Physics 2024-05-10 Lucas Hedström , Antón Carcedo Martínez , Ludvig Lizana

Community detection is a fundamental problem in network analysis, with applications in many diverse areas. The stochastic block model is a common tool for model-based community detection, and asymptotic tools for checking consistency of…

Statistics Theory · Mathematics 2015-03-18 Yunpeng Zhao , Elizaveta Levina , Ji Zhu

The limit of the entropy in the stochastic block model (SBM) has been characterized in the sparse regime for the special case of disassortative communities [COKPZ17] and for the classical case of assortative communities but in the dense…

Probability · Mathematics 2021-02-01 Emmanuel Abbe , Elisabetta Cornacchia , Yuzhou Gu , Yury Polyanskiy

Spectral methods offer a tractable, global framework for clustering in graphs via eigenvector computations on graph matrices. Hypergraph data, in which entities interact on edges of arbitrary size, poses challenges for matrix…

Social and Information Networks · Computer Science 2022-09-07 Philip Chodrow , Nicole Eikmeier , Jamie Haddock

Semidefinite programs have recently been developed for the problem of community detection, which may be viewed as a special case of the stochastic blockmodel. Here, we develop a semidefinite program that can be tailored to other instances…

Statistics Theory · Mathematics 2016-11-17 David Choi

Community detection is a fundamental unsupervised learning problem for unlabeled networks which has a broad range of applications. Many community detection algorithms assume that the number of clusters $r$ is known apriori. In this paper,…

Machine Learning · Statistics 2018-03-20 Bowei Yan , Purnamrita Sarkar , Xiuyuan Cheng

Detecting communities in high-dimensional graphs can be achieved by applying random matrix theory where the adjacency matrix of the graph is modeled by a Stochastic Block Model (SBM). However, the SBM makes an unrealistic assumption that…

Signal Processing · Electrical Eng. & Systems 2023-12-08 Robert Malinas , Dogyoon Song , Alfred O. Hero

One of the most important tasks in understanding the complex spatial organization of the genome consists in extracting information about this spatial organization, the function and structure of chromatin topological domains from existing…

Biological Physics · Physics 2016-01-07 Alexander P. Moscalets , Leonid I. Nazarov , Mikhail V. Tamm

The geometric block model is a recently proposed generative model for random graphs that is able to capture the inherent geometric properties of many community detection problems, providing more accurate characterizations of practical…

Social and Information Networks · Computer Science 2019-12-16 Eli Chien , Antonia Maria Tulino , Jaime Llorca

Detecting communities or the modular structure of real-life networks (e.g. a social network or a product purchase network) is an important task because the way a network functions is often determined by its communities. Traditional…

Social and Information Networks · Computer Science 2020-06-30 Swarup Chattopadhyay , Debasis Ganguly

The conformational kinetics of enzymes can be reliably revealed when they are governed by Markovian dynamics. Hidden Markov Models (HMMs) are appropriate especially in the case of conformational states that are hardly distinguishable.…

Quantitative Methods · Quantitative Biology 2009-02-05 A. Kovalev , N. Zarrabi , F. Werz , M. Boersch , Z. Ristic , H. Lill , D. Bald , C. Tietz , J. Wrachtrup

In this paper, we consider the soft geometric block model (SGBM) with a fixed number $k \geq 2$ of homogeneous communities in the dense regime, and we introduce a spectral clustering algorithm for community recovery on graphs generated by…

Social and Information Networks · Computer Science 2025-08-05 Luiz Emilio Allem , Konstantin Avrachenkov , Carlos Hoppen , Hariprasad Manjunath , Lucas Siviero Sibemberg

Graph embeddings have emerged as a powerful tool for understanding the structure of graphs. Unlike classical spectral methods, recent methods such as DeepWalk, Node2Vec, etc. are based on solving nonlinear optimization problems on the…

Machine Learning · Computer Science 2024-10-29 Christopher Harker , Aditya Bhaskara

Community detection, discovering the underlying communities within a network from observed connections, is a fundamental problem in network analysis, yet it remains underexplored for signed networks. In signed networks, both edge connection…

Methodology · Statistics 2026-02-17 Yichao Chen , Weijing Tang , Ji Zhu

The increasing prevalence of network data in a vast variety of fields and the need to extract useful information out of them have spurred fast developments in related models and algorithms. Among the various learning tasks with network…

Methodology · Statistics 2023-04-10 Luyi Shen , Arash Amini , Nathaniel Josephs , Lizhen Lin

Many algorithms have been proposed for fitting network models with communities, but most of them do not scale well to large networks, and often fail on sparse networks. Here we propose a new fast pseudo-likelihood method for fitting the…

Social and Information Networks · Computer Science 2013-11-06 Arash A. Amini , Aiyou Chen , Peter J. Bickel , Elizaveta Levina

Higher-order motif structures and multi-vertex interactions are becoming increasingly important in studies that aim to improve our understanding of functionalities and evolution patterns of networks. To elucidate the role of higher-order…

Machine Learning · Statistics 2018-12-18 Subhadeep Paul , Olgica Milenkovic , Yuguo Chen

Statistical node clustering in discrete time dynamic networks is an emerging field that raises many challenges. Here, we explore statistical properties and frequentist inference in a model that combines a stochastic block model (SBM) for…

Methodology · Statistics 2016-06-23 Catherine Matias , Vincent Miele