Related papers: Hidden Words Statistics for Large Patterns
We consider the longest common subsequence problem in the context of subsequences with gap constraints. In particular, following Day et al. 2022, we consider the setting when the distance (i. e., the gap) between two consecutive symbols of…
We present an online algorithm to deal with pattern matching in strings. The problem we investigate is commonly known as string matching with mismatches in which the objective is to report the number of characters that match when a pattern…
We study the length of the longest increasing and longest decreasing subsequences of random permutations drawn from the Mallows measure. Under this measure, the probability of a permutation pi in S_n is proportional to q^{inv(pi)} where q…
A regular expression specifies a set of strings formed by single characters combined with concatenation, union, and Kleene star operators. Given a regular expression $R$ and a string $Q$, the regular expression matching problem is to decide…
The problem of identification of statistically significant patterns in a sequence of data has been applied to many domains such as intrusion detection systems, financial models, web-click records, automated monitoring systems, computational…
We consider the distribution of the length of the longest subsequence avoiding a given pattern in a random permutation of length n. The well-studied case of a longest increasing subsequence corresponds to avoiding the pattern 21. We show…
Analyzing patterns in a sequence of events has applications in text analysis, computer programming, and genomics research. In this paper, we consider the all-window-length analysis model which analyzes a sequence of events with respect to…
Words in some natural languages can have a composite structure. Elements of this structure include the root (that could also be composite), prefixes and suffixes with which various nuances and relations to other words can be expressed.…
We begin with a new analysis of formal words. Let w be a formal word in letters g_1,...,g_k. The word map associated with w maps the permutations s_1,...,s_k in S_n to the permutation obtained by replacing for each i, every occurrence of…
With the advent of large-scale heterogeneous search engines comes the problem of unified search control resulting in mismatches that could have otherwise avoided. A mechanism is needed to determine exact patterns in web mining and…
An absent factor of a string $w$ is a string $u$ which does not occur as a contiguous substring (a.k.a. factor) inside $w$. We extend this well-studied notion and define absent subsequences: a string $u$ is an absent subsequence of a string…
Dot plots are a standard method for local comparison of biological sequences. In a dot plot, a substring to substring distance is computed for all pairs of fixed-size windows in the input strings. Commonly, the Hamming distance is used…
We consider the problem of computing a $(1+\epsilon)$-approximation of the Hamming distance between a pattern of length $n$ and successive substrings of a stream. We first look at the one-way randomised communication complexity of this…
Based on Euclid's algorithm, we find a kind of special sequences which play an interesting role in the study of primes. We call them W Sequences. They not only ties up the distribution of primes in short interval but also enables us to give…
Given $d$ strings over the alphabet $\{0,1,\ldots,\sigma{-}1\}$, the classical Aho--Corasick data structure allows us to find all $occ$ occurrences of the strings in any text $T$ in $O(|T| + occ)$ time using $O(m\log m)$ bits of space,…
This paper introduces the sequence covering similarity, that we formally define for evaluating the similarity between a symbolic sequence (string) and a set of symbolic sequences (strings). From this covering similarity we derive a…
The order preserving pattern matching (OPPM) problem is, given a pattern string $p$ and a text string $t$, find all substrings of $t$ which have the same relative orders as $p$. In this paper, we consider two variants of the OPPM problem…
In this paper, we extend the notion of gapped strings to elastic-degenerate strings. An elastic-degenerate string can been seen as an ordered collection of k > 1 seeds (substrings/subpatterns) interleaved by elastic-degenerate symbols such…
We investigate the longest common substring problem for encoded sequences and its asymptotic behaviour. The main result is a strong law of large numbers for a re-scaled version of this quantity, which presents an explicit relation with the…
This article investigates the asymptotic distribution of penalized estimators with non-differentiable penalties designed to recover low-dimensional pattern structures. Patterns play a central role in estimation, as they reveal the…