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We discuss existing and new computational analysis techniques to classify local atomic arrangements in large-scale atomistic computer simulations of crystalline solids. This article includes a performance comparison of typical analysis…

Materials Science · Physics 2012-06-13 Alexander Stukowski

Successful scientific applications of large-scale molecular dynamics often rely on automated methods for identifying the local crystalline structure of condensed phases. Many existing methods for structural identification, such as Common…

Materials Science · Physics 2016-05-24 Peter Mahler Larsen , Søren Schmidt , Jakob Schiøtz

Accurate structural analysis is essential to gain physical knowledge and understanding of atomic-scale processes in materials from atomistic simulations. However, traditional analysis methods often reach their limits when applied to…

Calibration, the practice of choosing the parameters of a structural model to match certain empirical moments, can be viewed as minimum distance estimation. Existing standard error formulas for such estimators require a consistent estimate…

Econometrics · Economics 2024-06-19 Matthew D. Cocci , Mikkel Plagborg-Møller

Numerous theories of failure have been postulated and implemented in various commercial programs for composite materials. Even the best theories have had limited success in predicting damage and failure in validation exercises. In view of…

Machine Learning · Computer Science 2021-06-08 Subramaniam Rajan , Bilal Khaled , Loukham Shyamsunder

Identifying local structural motifs and packing patterns of molecular solids is a challenging task for both simulation and experiment. We demonstrate two novel approaches to characterize local environments in different polymorphs of…

Materials Science · Physics 2024-04-02 Daisuke Kuroshima , Michael Kilgour , Mark E. Tuckerman , Jutta Rogal

In the context of cluster analysis and graph partitioning, many external evaluation measures have been proposed in the literature to compare two partitions of the same set. This makes the task of selecting the most appropriate measure for a…

Machine Learning · Computer Science 2021-02-09 Nejat Arinik , Vincent Labatut , Rosa Figueiredo

Driven by a wide range of applications, many principal subspace estimation problems have been studied individually under different structural constraints. This paper presents a unified framework for the statistical analysis of a general…

Statistics Theory · Mathematics 2020-11-17 T. Tony Cai , Hongzhe Li , Rong Ma

We suggest new modification (we call it a noise reduction procedure) for Steinhardt parameters which are often used for detecting crystalline structures in computer simulation of solids and soft matter systems. We have also developed a new…

Computational Physics · Physics 2024-04-25 Evgeniia Filimonova , Viktor Ivanov , Timur Shakirov

Nearest neighbor methods are a popular class of nonparametric estimators with several desirable properties, such as adaptivity to different distance scales in different regions of space. Prior work on convergence rates for nearest neighbor…

Machine Learning · Computer Science 2014-07-03 Kamalika Chaudhuri , Sanjoy Dasgupta

A general asymptotic framework is developed for studying consis- tency properties of principal component analysis (PCA). Our frame- work includes several previously studied domains of asymptotics as special cases and allows one to…

Statistics Theory · Mathematics 2016-11-26 Dan Shen , Haipeng Shen , J. S. Marron

Atomic-level modeling performed at large scales enables the investigation of mesoscale materials properties with atom-by-atom resolution. The spatial complexity of such cross-scale simulations renders them unsuitable for simple human visual…

Materials Science · Physics 2022-04-05 Heejung Chung , Rodrigo Freitas , Gowoon Cheon , Evan J. Reed

We present a general model-independent formalism of measuring CP and CPT violating parameters through time-ordered integrated rates of correlated decays of $C=\pm 1$ entangled states of neutral pseudoscalar mesons. We give the general…

High Energy Physics - Phenomenology · Physics 2015-06-03 Zhijie Huang , Yu Shi

In this paper, we test whether two datasets share a common clustering structure. As a leading example, we focus on comparing clustering structures in two independent random samples from two mixtures of multivariate normal distributions.…

Statistics Theory · Mathematics 2022-11-21 Chao Gao , Zongming Ma

We use machine learning algorithms to detect the crystalline phase in undercooled melts in molecular dynamics simulations. Our classification method is based on local conformation and environmental fingerprints of individual monomers. In…

Soft Condensed Matter · Physics 2023-11-02 Atmika Bhardwaj , Jens-Uwe Sommer , Marco Werner

The stability of statistical analysis is an important indicator for reproducibility, which is one main principle of scientific method. It entails that similar statistical conclusions can be reached based on independent samples from the same…

Machine Learning · Statistics 2015-09-01 Wei Sun , Xingye Qiao , Guang Cheng

Most research concerning the influence of network structure on phenomena taking place on the network focus on relationships between global statistics of the network structure and characteristic properties of those phenomena, even though…

Social and Information Networks · Computer Science 2012-03-07 Tomoyuki Yuasa , Susumu Shirayama

The confusion matrix is a standard tool for evaluating classifiers by providing insights into class-level errors. In heterogeneous settings, its values are shaped by two main factors: class similarity -- how easily the model confuses two…

Machine Learning · Computer Science 2026-03-31 Johan Erbani , Pierre-Edouard Portier , Elod Egyed-Zsigmond , Sonia Ben Mokhtar , Diana Nurbakova

The problem of base station cooperation has recently been set within the framework of Stochastic Geometry. Existing works consider that a user dynamically chooses the set of stations that cooperate for his/her service. However, this…

Information Theory · Computer Science 2015-09-08 Anastasios Giovanidis , Luis David Alvarez Corrales , Laurent Decreusefond

Cognitive diagnosis models have been popularly used in fields such as education, psychology, and social sciences. While parametric likelihood estimation is a prevailing method for fitting cognitive diagnosis models, nonparametric…

Statistics Theory · Mathematics 2025-10-01 Chengyu Cui , Yanlong Liu , Gongjun Xu
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