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Krabbe disease (KD) is a rare demyelinating sphingolipidosis, often fatal in the first years of life. It is caused by the inactivation of the galactocerebrosidase (GALC) enzyme that causes an increase in the cellular levels of psychosine…

Neurons and Cognition · Quantitative Biology 2020-03-10 Giuseppe de Vito , Valentina Cappello , Ilaria Tonazzini , Marco Cecchini , Vincenzo Piazza

When a planet transits its host star, it blocks regions of the stellar surface from view; this causes a distortion of the spectral lines and a change in the line-of-sight (LOS) velocities, known as the Rossiter-McLaughlin (RM) effect. Since…

Earth and Planetary Astrophysics · Physics 2016-03-30 H. M. Cegla , C. Lovis , V. Bourrier , B. Beeck , C. A. Watson , F. Pepe

We propose a novel approach using Multiplex-Coherent Anti-Stokes Raman Scattering (M-CARS) for la-bel-free discriminations in biomedical tissues. The strategy is based on the evaluation of the contrast be-tween resonant and nonresonant…

Nonlinear optical methods, such as coherent anti-Stokes Raman scattering (CARS) and stimulated Raman scattering (SRS), are able to perform label free imaging, with chemical bonds specificity. Here, we demonstrate that the use of circularly…

Analysis of nanoscale short-range chemical and/or structural order via (scanning) transmission electron microscopy (S/TEM) imaging is fundamentally limited by projection of the three dimensional sample, which averages informational along…

Materials Science · Physics 2022-08-25 Michael Xu , Abinash Kumar , James M. LeBeau

We develop a computational framework to examine the factors responsible for scattering-induced distortions of coherent anti-Stokes Raman scattering (CARS) signals in turbid samples. We apply the Huygens-Fresnel Wave-based Electric Field…

Computational Physics · Physics 2020-12-18 Janaka C. Ranasinghesagara , Giuseppe de Vito , Vincenzo Piazza , Eric O. Potma , Vasan Venugopalan

We demonstrate three-dimensional vibrational imaging of director structures in liquid crystals using coherent anti-Stokes Raman scattering (CARS) polarized microscopy. Spatial mapping of the structures is based on sensitivity of a polarized…

Soft Condensed Matter · Physics 2016-09-08 A. V. Kachynski , A. N. Kuzmin , P. N. Prasad , I. I. Smalyukh

We propose to model the fixation locations of the human eye when observing a still image by a Markovian point process in R 2 . Our approach is data driven using k-means clustering of the fixation locations to identify distinct salient…

Applications · Statistics 2020-01-07 Adam B. Kashlak , Eoin Devane , Helge Dietert , Henry Jackson

Coherent anti-Stokes Raman scattering (CARS) microscopy offers label-free chemical imaging capabilities, but its performance is constrained by small Raman scattering cross-section, strong non-resonant background (NRB), and limited…

In situ NMR spectroscopy is a powerful technique to investigate charge storage mechanisms in carbon-based supercapacitors thanks to its ability to distinguish ionic and molecular species adsorbed in the porous electrodes from those in the…

Using the perturbation-response scanning (PRS) technique, we study a set of 23 proteins that display a variety of conformational motions upon ligand binding (e.g. shear, hinge, allosteric). In most cases, PRS determines residues that may be…

Biomolecules · Quantitative Biology 2015-05-18 C Atilgan , Z N Gerek , S B Ozkan , A R Atilgan

Planetary rings produce a distinct shape distortion in transit lightcurves. However, to accurately model such lightcurves the observations need to cover the entire transit, especially ingress and egress, as well as an out-of-transit…

Earth and Planetary Astrophysics · Physics 2017-10-11 E. J. W. de Mooij , C. A. Watson , M. A. Kenworthy

Perception-related errors comprise most diagnostic mistakes in radiology. To mitigate this problem, radiologists employ personalized and high-dimensional visual search strategies, otherwise known as search patterns. Qualitative descriptions…

In general, in the studies of transit light-curves and the Rossiter-McLaughlin (RM), the contribution of the planet's gravitational microlensing is neglected. Theoretical studies, have, however shown that the planet's microlensing can…

Earth and Planetary Astrophysics · Physics 2013-10-31 M. Oshagh , G. Boué , P. Figueira , N. C. Santos , N. Haghighipour

Particle tracking is a key to single-particle-level confocal microscopy observation of colloidal suspensions, emulsions, and granular matter. The conventional tracking method has not been able to provide accurate information on the size of…

Soft Condensed Matter · Physics 2013-01-31 Mathieu Leocmach , Hajime Tanaka

The structure of membrane-active peptides and their interaction with lipid bilayers can be studied in oriented lipid membranes deposited on solid substrates. Such systems are desirable for a number of surface-sensitive techniques. Here we…

Soft Condensed Matter · Physics 2015-04-10 Chenghao Li , Doru Constantin , Tim Salditt

Strong coupling of molecular vibrations with light creates polariton states, enabling control over many optical and chemical properties. However, the near-field signatures of strong coupling are difficult to map as most cavities are closed…

We propose a full-vectorial numerical study of far field radiation patterns in coherent anti-Stokes Raman scattering (CARS) microscopy. We emphasis the particular role of the Raman depolarisation ratio of the observed medium and show how it…

Optics · Physics 2009-11-13 D. Gachet , N. Sandeau , H. Rigneault

We present an experimental signature of the Anderson localisation of microcavity polaritons, and provide a systematic study of the dependence on disorder strength. We reveal a controllable degree of localisation, as characterised by the…

We study the effect of cholesterol on the structure of dipalmitoylphosphatidylcholine (DPPC) phospholipid bilayers. Using extensive molecular dynamics computer simulations at atomistic resolution we observe and quantify several structural…

Biological Physics · Physics 2018-12-26 Felix Leeb , Lutz Maibaum
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