Related papers: Gorenstein property for phylogenetic trivalent tre…
In this paper we investigate properties of algebraic varieties representing group-based phylogenetic models. We propose a method of generating many phylogenetic invariants. We prove that we obtain all invariants for any tree for the binary…
Work of Buczynska, Wisniewski, Sturmfels and Xu, and the second author has linked the group-based phylogenetic statistical model associated with the group Z/2Z with the Wess-Zumino-Witten (WZW) model of conformal field theory associated to…
We provide a complete classification of normal phylogenetic varieties coming from tripods, and more generally, from trivalent trees. Let $G$ be an abelian group. We prove that the group-based phylogenetic variety $X_{G,\mathcal{T}}$, for…
We give a complete criterion for when two hyperbolic automorphisms of a tree generate a free, discrete subgroup. The decision depends only on three geometric invariants: the translation lengths of the generators and the length of overlap of…
Gorenstein liaison seems to be the natural notion to generalize to higher codimension the well-known results about liaison of varieties of codimension~2 in projective space. In this paper we study points in ${\mathbb P}^3$ and curves in…
Equivariant tree models are statistical models used in the reconstruction of phylogenetic trees from genetic data. Here equivariant refers to a symmetry group imposed on the root distribution and on the transition matrices in the model. We…
We compute the Grothendieck group of certain 2-Calabi--Yau triangulated categories appearing naturally in the study of the link between quiver representations and Fomin--Zelevinsky's cluster algebras. In this setup, we also prove a…
In this paper we present geometric features of group based models. We focus on the 3-Kimura model. We present a precise geometric description of the variety associated to any tree on a Zariski open set. In particular this set contains all…
Relations between Gorenstein derived categories, Gorenstein defect categories and Gorenstein stable categories are established. Using these, the Gorensteinness of an algebra $A$ and invariants with respect to recollements of the bounded…
Motivated by phylogenetics, our aim is to obtain a system of equations that define a phylogenetic variety on an open set containing the biologically meaningful points. In this paper we consider phylogenetic varieties defined via group-based…
In this article, we study the properties of profinite geometric iterated monodromy groups associated to polynomials. Such groups can be seen as generic representations of absolute Galois groups of number fields into the automorphism group…
The general Markov model of the evolution of biological sequences along a tree leads to a parameterization of an algebraic variety. Understanding this variety and the polynomials, called phylogenetic invariants, which vanish on it, is a…
This is mainly an expository text on the Haagerup property for countable groupoids equipped with a quasi-invariant measure, aiming to complete an article of Jolissaint devoted to the study of this property for probability measure preserving…
In a series of recent works it has been shown that a class of simple models of evolving populations under selection leads to genealogical trees whose statistics are given by the Bolthausen-Sznitman coalescent rather than by the well known…
We examine domino tilings of rectangular boards, which are in natural bijection with perfect matchings of grid graphs. This leads to the study of their associated perfect matching polytopes, and we present some of their properties, in…
The multi-species coalescent provides an elegant theoretical framework for estimating species trees and species demographics from genetic markers. Practical applications of the multi-species coalescent model are, however, limited by the…
We give a new proof of the identity $\zeta(\{2,1\}^l)=\zeta(\{3\}^l)$ of the multiple zeta values, where $l=1,2,\dots$, using generating functions of the underlying generalized polylogarithms. In the course of study we arrive at…
Let $W$ be a $G$-graded algebra over a field of characteristic zero, where $G$ is a finite group. We develope a theory of generalized $G$-graded polynomial identities satisfied by any finite-dimensional $W$-algebra $A$, by mean of the…
Relying on the theory of agrarian invariants introduced in previous work, we solve a conjecture of Friedl-Tillmann: we show that the marked polytopes they constructed for two-generator one-relator groups with nice presentations are…
A first-order theory has the Schroder-Bernstein property if any two of its models that are elementarily bi-embeddable are isomorphic. We prove that if G is an abelian group, then the follwing are equivalent: 1. Th(G, +) has the…