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Many physical, chemical and biological processes rely on intrinsic oscillations to employ resonance responses to external stimuli of certain frequency. Such resonance phenomena in biological systems are typically explained by one of two…

We consider the presence of oscillations in the primordial bispectrum, inspired by three different cosmological models; features in the primordial potential, resonant type non-Gaussianities and deviation from the standard Bunch Davies…

Cosmology and Nongalactic Astrophysics · Physics 2016-06-03 P. Daniel Meerburg

Context. The overdensity inside a cosmological sub-volume and the tidal fields from its surroundings affect the matter distribution of the region. The resulting difference between the local and global power spectra is characterized by the…

Cosmology and Nongalactic Astrophysics · Physics 2022-05-11 Gábor Rácz , István Szapudi , István Csabai

We analyze the response of a complex quantum-mechanical system (e. g., a quantum dot) to a time-dependent perturbation. Assuming the dot energy spectrum and the perturbation to be described by the Gaussian Orthogonal Ensemble of random…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 D. M. Basko , M. A. Skvortsov , V. E. Kravtsov

We consider multiscale stochastic spatial gene networks involving chemical reactions and diffusions. The model is Markovian and the transitions are driven by Poisson random clocks. We consider a case where there are two different spatial…

Probability · Mathematics 2020-07-10 Arnaud Debussche , Mac Jugal Nguepedja Nankep

This paper studies the critical behavior of the 3d classical $\mathrm{O}(N)$ model with a boundary. Recently, one of us established that upon treating $N$ as a continuous variable, there exists a critical value $N_c > 2$ such that for $2…

Statistical Mechanics · Physics 2022-06-15 Jaychandran Padayasi , Abijith Krishnan , Max A. Metlitski , Ilya A. Gruzberg , Marco Meineri

We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this class of non-equilibrium models is developed by adopting…

Biological Physics · Physics 2007-05-23 Peter F. Arndt , Christopher B. Burge , Terence Hwa

The effect of heterogeneous sequence composition on the denaturation of double stranded DNA is investigated. The resulting pair-binding energy variation is found to have a negligible effect on the critical properties of the smooth second…

Statistical Mechanics · Physics 2009-10-30 D. Cule , T. Hwa

The vibrational behavior of molecules serves as a crucial fingerprint of their structure, chemical state, and surrounding environment. Neutron vibrational spectroscopy provides comprehensive measurements of vibrational modes without…

Chemical Physics · Physics 2025-02-19 Bowen Han , Pei Zhang , Kshitij Mehta , Massimiliano Lupo Pasini , Mingda Li , Yongqiang Cheng

We investigate kinetic pathways of the DNA melting transition using variable-range versions of the Poland-Scheraga (PS) and Peyrard-Dauxois-Bishop (PDB) models of DNA. In the PS model, we construct a phi^4-field theory to calculate the…

Biological Physics · Physics 2013-03-29 Aaron Santos , William Klein

Multi-dimensional spectroscopy represents a particularly insightful tool for investigating the interplay of nuclear and electronic dynamics, which plays an important role in a number of photophysical processes and photochemical reactions.…

Quantum Physics · Physics 2022-07-26 Frank Ernesto Quintela Rodriguez , Filippo Troiani

We analyze a class of cell-bulk coupled PDE-ODE models, motivated by quorum and diffusion sensing phenomena in microbial systems, that characterize communication between localized spatially segregated dynamically active signaling…

Pattern Formation and Solitons · Physics 2020-07-20 Sarafa A. Iyaniwura , Michael J. Ward

Chemical abundance determinations from stellar spectra are challenged by observational noise, limitations in stellar models, and departures from simplifying assumptions. While traditional and supervised machine learning methods have made…

Solar and Stellar Astrophysics · Physics 2025-12-24 Theosamuele Signor , Paula Jofré , Hernan Lira , Sara Vitali , Luis Martí , Nayat Sánchez-Pi

Driven dissipative systems at ambient conditions typically exhibit continuous responses shaped by fluctuations and relaxation, with discrete macroscopic states arising only under specific dynamical constraints. Here, we report the emergence…

Statistical Mechanics · Physics 2026-03-31 Mariusz Pietruszka

In this work we present a hypothesis that spectral response of atoms or molecules to a pulse of electromagnetic radiation with fast rising or falling fronts would contain a unique emission line that is located approximately near the…

Applied Physics · Physics 2020-01-29 V. V. Semak , M. N. Shneider

Harmonic decompositions of multivariate time series are considered for which we adopt an integral operator approach with periodic semigroup kernels. Spectral decomposition theorems are derived that cover the important cases of two-time…

Spectral Theory · Mathematics 2017-10-25 Mickael D. Chekroun , Dmitri Kondrashov

We semiclassically derive the leading off-diagonal correction to the spectral form factor of quantum systems with a chaotic classical counterpart. To this end we present a phase space generalization of a recent approach for uniformly…

Chaotic Dynamics · Physics 2009-11-10 M. Turek , K. Richter

Significant fraction (98.5% in humans) of most animal genomes is non- coding dark matter. Its largely unknown function (1-5) is related to programming (rather than to spontaneous mutations) of accurate adaptation to rapidly changing…

Genomics · Quantitative Biology 2007-08-02 Mark Ya. Azbel

We investigate a real scalar field whose dynamics is governed by a nonlinear wave equation. We show that classical description can be applied to a quantum system of many interacting bosons provided that some quantum ingredients are…

Other Condensed Matter · Physics 2015-06-25 Emilia Witkowska , Mariusz Gajda , Jan Mostowski

We study the evolution of hidden-weight spectra in wide neural networks trained by (stochastic) gradient descent. We develop a two-level dynamical mean-field theory (DMFT) that jointly tracks bulk and outlier spectral dynamics for spiked…

Disordered Systems and Neural Networks · Physics 2026-05-22 Clarissa Lauditi , Cengiz Pehlevan , Blake Bordelon
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