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Acquiring plausible pathways on high-dimensional structural distributions is beneficial in several domains. For example, in the drug discovery field, a protein conformational pathway, i.e. a highly probable sequence of protein structural…

Quantitative Methods · Quantitative Biology 2025-06-04 Ziyad Oulhaj , Yoshiyuki Ishii , Kento Ohga , Kimihiro Yamazaki , Mutsuyo Wada , Yuhei Umeda , Takashi Kato , Yuichiro Wada , Hiroaki Kurihara

We present a novel clustering approach for moving object trajectories that are constrained by an underlying road network. The approach builds a similarity graph based on these trajectories then uses modularity-optimization hiearchical graph…

Machine Learning · Statistics 2012-10-08 Mohamed Khalil El Mahrsi , Fabrice Rossi

The search is based on the preliminary transformation of matrices or adjacency lists traditionally used in the study of graphs into projections cleared of redundant information (refined) followed by the selection of the desired shortest…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-16 V. A. Melent'ev

Numerical computation of shortest paths or geodesics on curved domains, as well as the associated geodesic distance, arises in a broad range of applications across digital geometry processing, scientific computing, computer graphics, and…

Graphics · Computer Science 2020-07-22 Keenan Crane , Marco Livesu , Enrico Puppo , Yipeng Qin

In this chapter, we give an overview of part of our previous work based on the minimal path framework and the Eikonal partial differential equation (PDE). We show that by designing adequate Riemannian and Randers geodesic metrics the…

Computer Vision and Pattern Recognition · Computer Science 2019-09-30 Da Chen , Laurent D. Cohen

In this paper, we present a flexible and probabilistic framework for tracking topological features in time-varying scalar fields using merge trees and partial optimal transport. Merge trees are topological descriptors that record the…

Computational Geometry · Computer Science 2025-08-26 Mingzhe Li , Xinyuan Yan , Lin Yan , Tom Needham , Bei Wang

Line segment detection is an essential task in computer vision and image analysis, as it is the critical foundation for advanced tasks such as shape modeling and road lane line detection for autonomous driving. We present a robust…

Computer Vision and Pattern Recognition · Computer Science 2020-03-02 Ming Gong , Liping Yang , Catherine Potts , Vijayan K. Asari , Diane Oyen , Brendt Wohlberg

Spatial graphs are particular graphs for which the nodes are localized in space (e.g., public transport network, molecules, branching biological structures). In this work, we consider the problem of spatial graph reduction, that aims to…

Machine Learning · Statistics 2026-03-10 Anna Calissano , Etienne Lasalle

Minimal paths are regarded as a powerful and efficient tool for boundary detection and image segmentation due to its global optimality and the well-established numerical solutions such as fast marching method. In this paper, we introduce a…

Computer Vision and Pattern Recognition · Computer Science 2021-06-09 Da Chen , Jian Zhu , Xinxin Zhang , Minglei Shu , Laurent D. Cohen

Tree-like structures such as retinal images are widely studied in computer-aided diagnosis systems for large-scale screening programs. Despite several segmentation and tracking methods proposed in the literature, there still exist several…

Computer Vision and Pattern Recognition · Computer Science 2017-06-27 Samaneh Abbasi-Sureshjani , Marta Favali , Giovanna Citti , Alessandro Sarti , Bart M. ter Haar Romeny

We present a flexible discretization technique for computational models of thin tubular networks embedded in a bulk domain, for example a porous medium. These systems occur in the simulation of fluid flow in vascularized biological tissue,…

Computational Engineering, Finance, and Science · Computer Science 2022-02-01 Timo Koch

Accurate segmentation of tubular structures in medical images, such as vessels and airway trees, is crucial for computer-aided diagnosis, radiotherapy, and surgical planning. However, significant challenges exist in algorithm design when…

Image and Video Processing · Electrical Eng. & Systems 2025-04-11 Yi Huang , Ke Zhang , Wei Liu , Yuanyuan Wang , Vishal M. Patel , Le Lu , Xu Han , Dakai Jin , Ke Yan

Curvilinear structures, which include line-like continuous objects, are fundamental geometrical elements in image-based applications. Reconstructing these structures from images constitutes a pivotal research area in computer vision.…

Computer Vision and Pattern Recognition · Computer Science 2024-05-07 Chao Liu , Ting Zhao , Nenggan Zheng

This paper presents a robust tracking controller for tracking curvature-constrained paths by vehicles/robots with uncertain Dubins dynamics. Although Dubins paths have been widely used in vehicular and robotic applications, robust and…

Systems and Control · Electrical Eng. & Systems 2026-05-26 Xingjian Xue , Sze Zheng Yong

A Dubins path is a shortest path with bounded curvature. The seminal result in non-holonomic motion planning is that (in the absence of obstacles) a Dubins path consists either from a circular arc followed by a segment followed by another…

Discrete Mathematics · Computer Science 2012-11-14 Sylvester Eriksson-Bique , David Kirkpatrick , Valentin Polishchuk

The minimal geodesic models based on the Eikonal equations are capable of finding suitable solutions in various image segmentation scenarios. Existing geodesic-based segmentation approaches usually exploit image features in conjunction with…

Computer Vision and Pattern Recognition · Computer Science 2022-11-28 Da Chen , Jean-Marie Mirebeau , Minglei Shu , Xuecheng Tai , Laurent D. Cohen

Extracting complex structures from grid-based data is a common key step in automated medical image analysis. The conventional solution to recovering tree-structured geometries typically involves computing the minimal cost path through…

Computer Vision and Pattern Recognition · Computer Science 2023-01-03 James Batten , Matthew Sinclair , Ben Glocker , Michiel Schaap

Detection of curvilinear structures in images has long been of interest. One of the most challenging aspects of this problem is inferring the graph representation of the curvilinear network. Most existing delineation approaches first…

Computer Vision and Pattern Recognition · Computer Science 2019-05-13 Agata Mosinska , Mateusz Kozinski , Pascal Fua

Manifolds discovered by machine learning models provide a compact representation of the underlying data. Geodesics on these manifolds define locally length-minimising curves and provide a notion of distance, which are key for reduced-order…

Machine Learning · Computer Science 2023-05-25 Daniel Kelshaw , Luca Magri

This paper introduces an exact algorithm for the construction of a shortest curvature-constrained network interconnecting a given set of directed points in the plane and an iterative method for doing so in 3D space. Such a network will be…