Related papers: On the Collection of Fringe Subtrees in Random Bin…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
This survey studies asymptotics of random fringe trees and extended fringe trees in random trees that can be constructed as family trees of a Crump-Mode-Jagers branching process, stopped at a suitable time. This includes random recursive…
In this paper we investigate the geometry of a discrete Bayesian network whose graph is a tree all of whose variables are binary and the only observed variables are those labeling its leaves. We provide the full geometric description of…
This paper deals with the size of the spanning tree of p randomly chosen nodes in a binary search tree. It is shown via generating functions methods, that for fixed p, the (normalized) spanning tree size converges in law to the Normal…
Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…
We prove that the size of the largest common subtree between two uniform, independent, leaf-labelled random binary trees of size $n$ is typically less than $n^{1/2-\varepsilon}$ for some $\varepsilon>0$. Our proof relies on the coupling…
Normal networks are an important class of phylogenetic networks that have compelling mathematical properties which align with intuition about inference from genetic data. While tools enabling widespread use of phylogenetic networks in the…
We study a model of random binary trees grown "by the leaves" in the style of Luczak and Winkler. If $\tau_n$ is a uniform plane binary tree of size $n$, Luczak and Winkler, and later explicitly Caraceni and Stauffer, constructed a measure…
We consider a (random permutation model) binary search tree with n nodes and give asymptotics on the loglog scale for the height H_n and saturation level h_n of the tree as n\to\infty, both almost surely and in probability. We then consider…
Binary jumbled pattern matching asks to preprocess a binary string $S$ in order to answer queries $(i,j)$ which ask for a substring of $S$ that is of length $i$ and has exactly $j$ 1-bits. This problem naturally generalizes to…
We consider root-finding algorithms for random rooted trees grown by uniform attachment. Given an unlabeled copy of the tree and a target accuracy $\varepsilon > 0$, such an algorithm outputs a set of nodes that contains the root with…
This paper considers the enumeration of ternary trees (i.e. rooted ordered trees in which each vertex has 0 or 3 children) avoiding a contiguous ternary tree pattern. We begin by finding recurrence relations for several simple tree…
A monotone drawing of a graph G is a straight-line drawing of G such that every pair of vertices is connected by a path that is monotone with respect to some direction. Trees, as a special class of graphs, have been the focus of several…
In our previous work, we introduced the random $k$-cut number for rooted graphs. In this paper, we show that the distribution of the $k$-cut number in complete binary trees of size $n$, after rescaling, is asymptotically a periodic function…
In this paper, we study arbitrary subword-closed languages over the alphabet $\{0,1\}$ (binary subword-closed languages). For the set of words $L(n)$ of the length $n$ belonging to a binary subword-closed language $L$, we investigate the…
This paper considers the enumeration of trees avoiding a contiguous pattern. We provide an algorithm for computing the generating function that counts n-leaf binary trees avoiding a given binary tree pattern t. Equipped with this counting…
Pick a sequence of uniform points on the $d$-dimensional sphere. Then, link the $n$th point to its closest one that arrives in the past. This constructs a labelled tree called the nearest neighbour tree on the $d$-dimensional sphere. These…
A rooted tree is balanced if the degree of a vertex depends only on its distance to the root. In this paper we determine the sharp threshold for the appearance of a large family of balanced spanning trees in the random geometric graph…
We consider the rooted trees which not have isomorphic representation and introduce a conception of complexity a natural number also. The connection between quantity such trees with $n$ edges and a complexity of natural number $n$ is…
Construction of phylogenetic trees and networks for extant species from their characters represents one of the key problems in phylogenomics. While solution to this problem is not always uniquely defined and there exist multiple methods for…