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Microarray techniques are widely used in Gene expression analysis. These techniques are based on discovering submatrices of genes that share similar expression patterns across a set of experimental conditions with coherence constraint.…

Quantitative Methods · Quantitative Biology 2020-01-27 Bilal Taher , Muhammad. H Fares , Saeed Jalili

As an effective algorithm for solving complex optimization problems, artificial bee colony (ABC) algorithm has shown to be competitive, but the same as other population-based algorithms, it is poor at balancing the abilities of global…

Neural and Evolutionary Computing · Computer Science 2021-12-03 Haiquan Wang , Hans-DietrichHaasis , Panpan Du , Xiaobin Xu , Menghao Su , Shengjun Wen , Wenxuan Yue , Shanshan Zhang

One of the important issues in wireless networks is the Routing problem that is effective on system performance, in this article the attempt is made to propose a routing algorithm using the bee colony in order to reduce energy consumption…

Networking and Internet Architecture · Computer Science 2012-09-18 Arash Ghorbannia Delavar , Elham Javiz

In this article we consider Bayesian estimation of static parameters for a class of partially observed McKean-Vlasov diffusion processes with discrete-time observations over a fixed time interval. This problem features several obstacles to…

Computation · Statistics 2025-04-23 Ajay Jasra , Amin Wu

This paper presents a new approach to solve linear and nonlinear model predictive control (MPC) problems that requires small memory footprint and throughput and is particularly suitable when the model and/or controller parameters change at…

Optimization and Control · Mathematics 2021-03-25 Nilay Saraf , Alberto Bemporad

The Pseudo-Marginal (PM) algorithm is a popular Markov chain Monte Carlo (MCMC) method used to sample from a target distribution when its density is inaccessible, but can be estimated with a non-negative unbiased estimator. Its performance…

Computation · Statistics 2025-09-30 Sarra Abaoubida , Mylène Bédard , Florian Maire

In this paper, we propose a novel memory-enabled non-uniform sampling-based bumblebee foraging algorithm (MEB) designed for optimal channel selection in a distributed Vehicular Dynamic Spectrum Access (VDSA) framework employed in a platoon…

Networking and Internet Architecture · Computer Science 2023-02-02 Kuldeep S. Gill , Pawel Kryszkiewicz , Pawel Sroka , Adrian Kliks , Alexander M. Wyglinski

Sequential Monte Carlo (SMC) methods are not only a popular tool in the analysis of state space models, but offer an alternative to MCMC in situations where Bayesian inference must proceed via simulation. This paper introduces a new SMC…

Computation · Statistics 2010-05-11 Paul Fearnhead , Benjamin M. Taylor

We describe the Microbial Community Reconstruction ({\bf MCR}) Problem, which is fundamental for microbiome analysis. In this problem, the goal is to reconstruct the identity and frequency of species comprising a microbial community, using…

Computational Engineering, Finance, and Science · Computer Science 2013-09-27 Or Zuk , Amnon Amir , Amit Zeisel , Ohad Shamir , Noam Shental

Approximate Bayesian computation methods can be used to evaluate posterior distributions without having to calculate likelihoods. In this paper we discuss and apply an approximate Bayesian computation (ABC) method based on sequential Monte…

Computation · Statistics 2009-01-15 Tina Toni , David Welch , Natalja Strelkowa , Andreas Ipsen , Michael P. H. Stumpf

A dual adaptive model predictive control (MPC) algorithm is presented for linear, time-invariant systems subject to bounded disturbances and parametric uncertainty in the state-space matrices. Online set-membership identification is…

Systems and Control · Electrical Eng. & Systems 2021-02-23 Anilkumar Parsi , Andrea Iannelli , Roy S. Smith

The finely tuned structures of membrane channels allow selective passage of ions through the available aqueous pores. In order to understand channel function, it is crucial to locate the pore and study its physical and chemical properties.…

Soft Condensed Matter · Physics 2007-05-23 Z. Kuang , A. Liu , T. L. Beck

Markov Chain Monte Carlo (MCMC) algorithms are commonly used for their versatility in sampling from complicated probability distributions. However, as the dimension of the distribution gets larger, the computational costs for a satisfactory…

Cosmology and Nongalactic Astrophysics · Physics 2020-12-01 Hector J. Hortua , Riccardo Volpi , Dimitri Marinelli , Luigi Malago

The conformational mobility of organic molecules defined as a variability of practically accessible conformers plays a critical role in determining electronic, chemical, and physical properties within computational methods. At the same…

In many technical fields, single-objective optimization procedures in continuous domains involve expensive numerical simulations. In this context, an improvement of the Artificial Bee Colony (ABC) algorithm, called the Artificial super-Bee…

Optimization and Control · Mathematics 2021-05-05 Enrico Ampellio , Luca Vassio

We study the initial beam acquisition problem in millimeter wave (mm-wave) networks from the perspective of best arm identification in multi-armed bandits (MABs). For the stationary environment, we propose a novel algorithm called…

Information Theory · Computer Science 2024-01-18 Gourab Ghatak

Artificial bee colony (ABC) algorithm has proved its importance in solving a number of problems including engineering optimization problems. ABC algorithm is one of the most popular and youngest member of the family of population based…

Artificial Intelligence · Computer Science 2014-07-23 Sandeep Kumar , Vivek Kumar Sharma , Rajani Kumari

A wide range of engineering design problems have been solved by the algorithms that simulates collective intelligence in swarms of birds or insects. The Artificial Bee Colony or ABC is one of the recent additions to the class of swarm…

Computational Engineering, Finance, and Science · Computer Science 2012-11-06 Tarun Kumar Sharma , Millie Pant , V. P. Singh

This paper introduces a new optimisation algorithm, called Adaptive Bacterial Colony Optimisation (ABCO), modelled after the foraging behaviour of E. coli bacteria. The algorithm follows three stages--explore, exploit and reproduce--and is…

Neural and Evolutionary Computing · Computer Science 2025-05-05 Barisi Kogam , Yevgeniya Kovalchuk , Mohamed Medhat Gaber

We present a Bayesian sampling algorithm called adaptive importance sampling or Population Monte Carlo (PMC), whose computational workload is easily parallelizable and thus has the potential to considerably reduce the wall-clock time…

Cosmology and Nongalactic Astrophysics · Physics 2009-09-02 Darren Wraith , Martin Kilbinger , Karim Benabed , Olivier Cappé , Jean-François Cardoso , Gersende Fort , Simon Prunet , Christian P. Robert