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Precise segmentation of brain structures in magnetic resonance imaging (MRI) is essential for reliable neuroimaging analysis, yet voxel-wise deep models often yield anatomically inconsistent results that diverge from expert-defined…

Computer Vision and Pattern Recognition · Computer Science 2026-05-15 Ahmed Rekik , R. Jarrett Rushmore , Sylvain Bouix , Linda Marrakchi-Kacem

Accurate anatomical labeling of intracranial arteries is essential for cerebrovascular diagnosis and hemodynamic analysis but remains time-consuming and subject to interoperator variability. We present a deep learning-based framework for…

Convolutional neural networks are state-of-the-art for various segmentation tasks. While for 2D images these networks are also computationally efficient, 3D convolutions have huge storage requirements and therefore, end-to-end training is…

Computer Vision and Pattern Recognition · Computer Science 2022-02-01 Christoph Angermann , Markus Haltmeier

Anatomical landmark detection (ALD) from a medical image is crucial for a wide array of clinical applications. While existing methods achieve quite some success in ALD, they often struggle to balance global context with computational…

Computer Vision and Pattern Recognition · Computer Science 2024-12-17 Xiaoqian Zhou , Zhen Huang , Heqin Zhu , Qingsong Yao , S. Kevin Zhou

Purpose: Deformable Image Registration (DIR) can benefit from additional guidance using corresponding landmarks in the images. However, the benefits thereof are largely understudied, especially due to the lack of automatic landmark…

Computer Vision and Pattern Recognition · Computer Science 2023-02-28 Monika Grewal , Jan Wiersma , Henrike Westerveld , Peter A. N. Bosman , Tanja Alderliesten

Three-dimensional facial stereophotogrammetry provides a detailed representation of craniofacial soft tissue without the use of ionizing radiation. While manual annotation of landmarks serves as the current gold standard for cephalometric…

Computer Vision and Pattern Recognition · Computer Science 2025-06-18 Bo Berends , Freek Bielevelt , Ruud Schreurs , Shankeeth Vinayahalingam , Thomas Maal , Guido de Jong

We present an efficient neural network method for locating anatomical landmarks in 3D medical CT scans, using atlas location autocontext in order to learn long-range spatial context. Location predictions are made by regression to Gaussian…

Computer Vision and Pattern Recognition · Computer Science 2018-10-02 Alison Q O'Neil , Antanas Kascenas , Joseph Henry , Daniel Wyeth , Matthew Shepherd , Erin Beveridge , Lauren Clunie , Carrie Sansom , Evelina Šeduikytė , Keith Muir , Ian Poole

Convolutional Neural Networks (CNNs) have been recently employed to solve problems from both the computer vision and medical image analysis fields. Despite their popularity, most approaches are only able to process 2D images while most…

Computer Vision and Pattern Recognition · Computer Science 2016-06-16 Fausto Milletari , Nassir Navab , Seyed-Ahmad Ahmadi

The ability of convolutional neural networks (CNNs) to recognize objects regardless of their position in the image is due to the translation-equivariance of the convolutional operation. Group-equivariant CNNs transfer this equivariance to…

Computer Vision and Pattern Recognition · Computer Science 2023-04-13 Thomas Wimmer , Vladimir Golkov , Hoai Nam Dang , Moritz Zaiss , Andreas Maier , Daniel Cremers

Deep learning networks have shown promising performance for accurate object localization in medial images, but require large amount of annotated data for supervised training, which is expensive and expertise burdensome. To address this…

Computer Vision and Pattern Recognition · Computer Science 2021-05-26 Wenhui Lei , Wei Xu , Ran Gu , Hao Fu , Shaoting Zhang , Guotai Wang

In this paper, an automatic algorithm aimed at volumetric segmentation of acute ischemic stroke lesion in non-contrast computed tomography brain 3D images is proposed. Our deep-learning approach is based on the popular 3D U-Net…

Image and Video Processing · Electrical Eng. & Systems 2023-10-31 A. V. Dobshik , S. K. Verbitskiy , I. A. Pestunov , K. M. Sherman , Yu. N. Sinyavskiy , A. A. Tulupov , V. B. Berikov

Anatomical landmark detection in medical images is essential for various clinical and research applications, including disease diagnosis and surgical planning. However, manual landmark annotation is time-consuming and requires significant…

Image and Video Processing · Electrical Eng. & Systems 2025-07-22 Soorena Salari , Arash Harirpoush , Hassan Rivaz , Yiming Xiao

The analysis of carotid arteries, particularly plaques, in multi-sequence Magnetic Resonance Imaging (MRI) data is crucial for assessing the risk of atherosclerosis and ischemic stroke. In order to evaluate metrics and radiomic features,…

Image and Video Processing · Electrical Eng. & Systems 2025-07-11 Marie-Christine Pali , Christina Schwaiger , Malik Galijasevic , Valentin K. Ladenhauf , Stephanie Mangesius , Elke R. Gizewski

Detecting 3D landmarks on cone-beam computed tomography (CBCT) is crucial to assessing and quantifying the anatomical abnormalities in 3D cephalometric analysis. However, the current methods are time-consuming and suffer from large biases…

Computer Vision and Pattern Recognition · Computer Science 2022-02-21 Runnan Chen , Yuexin Ma , Nenglun Chen , Lingjie Liu , Zhiming Cui , Yanhong Lin , Wenping Wang

The functional assessment of the left ventricle chamber of the heart requires detecting four landmark locations and measuring the internal dimension of the left ventricle and the approximate mass of the surrounding muscle. The key challenge…

Computer Vision and Pattern Recognition · Computer Science 2023-07-25 Masoud Mokhtari , Mobina Mahdavi , Hooman Vaseli , Christina Luong , Purang Abolmaesumi , Teresa S. M. Tsang , Renjie Liao

In recent years, 3D convolutional neural networks have become the dominant approach for volumetric medical image segmentation. However, compared to their 2D counterparts, 3D networks introduce substantially more training parameters and…

Image and Video Processing · Electrical Eng. & Systems 2022-06-01 Yuan Wang , Laura Blackie , Irene Miguel-Aliaga , Wenjia Bai

In this work we address the problem of landmark-based segmentation for anatomical structures. We propose HybridGNet, an encoder-decoder neural architecture which combines standard convolutions for image feature encoding, with graph…

Image and Video Processing · Electrical Eng. & Systems 2021-10-26 Nicolás Gaggion , Lucas Mansilla , Diego Milone , Enzo Ferrante

Objective: Model based deep learning (MBDL) has been challenging to apply to the reconstruction of 3D non-Cartesian MRI acquisitions due to extreme GPU memory demand (>250 GB using traditional backpropagation) primarily because the entire…

Medical Physics · Physics 2023-04-05 Zachary Miller , Ali Pirasteh , Kevin M. Johnson

We propose a new Patch-based Iterative Network (PIN) for fast and accurate landmark localisation in 3D medical volumes. PIN utilises a Convolutional Neural Network (CNN) to learn the spatial relationship between an image patch and…

Computer Vision and Pattern Recognition · Computer Science 2018-10-09 Yuanwei Li , Amir Alansary , Juan J. Cerrolaza , Bishesh Khanal , Matthew Sinclair , Jacqueline Matthew , Chandni Gupta , Caroline Knight , Bernhard Kainz , Daniel Rueckert

Intra-operative 2D-3D registration of X-ray images with pre-operatively acquired CT scans is a crucial procedure in orthopedic surgeries. Anatomical landmarks pre-annotated in the CT volume can be detected in X-ray images to establish 2D-3D…

Computer Vision and Pattern Recognition · Computer Science 2024-10-11 Pragyan Shrestha , Chun Xie , Yuichi Yoshii , Itaru Kitahara