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Fluorescence microscopy allows for a detailed inspection of cells, cellular networks, and anatomical landmarks by staining with a variety of carefully-selected markers visualized as color channels. Quantitative characterization of…

Computer Vision and Pattern Recognition · Computer Science 2021-08-26 Alvaro Gomariz , Tiziano Portenier , Patrick M. Helbling , Stephan Isringhausen , Ute Suessbier , César Nombela-Arrieta , Orcun Goksel

Purpose: Multi-expert deep learning training methods to automatically quantify ischemic brain tissue on Non-Contrast CT Materials and Methods: The data set consisted of 260 Non-Contrast CTs from 233 patients of acute ischemic stroke…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Sophie Ostmeier , Brian Axelrod , Benjamin Pulli , Benjamin F. J. Verhaaren , Abdelkader Mahammedi , Yongkai Liu , Christian Federau , Greg Zaharchuk , Jeremy J. Heit

This paper presents a lightweight framework for classifying brain stroke types from Diffusion-Weighted Imaging (DWI) MRI scans, employing a Multi-Layer Perceptron (MLP) neural network with Wavelet Transform for feature extraction. Accurate…

Image and Video Processing · Electrical Eng. & Systems 2025-06-19 Mana Mohammadi , Amirhesam Jafari Rad , Ashkan Behrouzi

The morbidity of brain stroke increased rapidly in the past few years. To help specialists in lesion measurements and treatment planning, automatic segmentation methods are critically required for clinical practices. Recently, approaches…

Image and Video Processing · Electrical Eng. & Systems 2020-01-01 Kehan Qi , Hao Yang , Cheng Li , Zaiyi Liu , Meiyun Wang , Qiegen Liu , Shanshan Wang

The study of healthy brain development helps to better understand the brain transformation and brain connectivity patterns which happen during childhood to adulthood. This study presents a sparse machine learning solution across whole-brain…

Machine Learning · Computer Science 2019-04-03 Peyman Hosseinzadeh Kassani , Alexej Gossmann , Yu-Ping Wang

Diffusion-weighted Magnetic Resonance Imaging (dMRI) is increasingly used to study the fetal brain in utero. An important computation enabled by dMRI is streamline tractography, which has unique applications such as tract-specific analysis…

Computer Vision and Pattern Recognition · Computer Science 2024-03-06 Camilo Calixto , Camilo Jaimes , Matheus D. Soldatelli , Simon K. Warfield , Ali Gholipour , Davood Karimi

Magnetoencephalography (MEG) scanner has been shown to be more accurate than other medical devices in detecting mild traumatic brain injury (mTBI). However, MEG scan data in certain spectrum ranges can be skewed, multimodal and…

Methodology · Statistics 2025-02-07 Jian Zhang , Gary Green

Delineating infarcted tissue in ischemic stroke lesions is crucial to determine the extend of damage and optimal treatment for this life-threatening condition. However, this problem remains challenging due to high variability of ischemic…

Computer Vision and Pattern Recognition · Computer Science 2018-10-17 Jose Dolz , Ismail Ben Ayed , Christian Desrosiers

The brain-computer interface (BCI) establishes a non-muscle channel that enables direct communication between the human body and an external device. Electroencephalography (EEG) is a popular non-invasive technique for recording brain…

Machine Learning · Computer Science 2026-02-23 Jamal Hwaidi , Mohamed Chahine Ghanem

Single-Photon Emission Computed Tomography (SPECT) left ventricular assessment protocols are important for detecting ischemia in high-risk patients. To quantitatively measure myocardial function, clinicians depend on commercially available…

Image and Video Processing · Electrical Eng. & Systems 2024-05-10 Ádám István Szűcs , Béla Kári , Oszkár Pártos

We present a method to segment MRI scans of the human brain into ischemic stroke lesion and normal tissues. We propose a neural network architecture in the form of a standard encoder-decoder where predictions are guided by a spatial…

Image and Video Processing · Electrical Eng. & Systems 2021-09-21 Alex Wong , Allison Chen , Yangchao Wu , Safa Cicek , Alexandre Tiard , Byung-Woo Hong , Stefano Soatto

Ultrasound Localization Microscopy (ULM) has recently enabled the mapping of the cerebral vasculature in vivo with a resolution ten times smaller than the wavelength used, down to ten microns. However, with frame rates up to 20.000 frames…

Medical Physics · Physics 2023-10-23 Erwan Hardy , Jonathan Poree , Hatim Belgharbi , Chloe Bourquin , Frederic Lesage , Jean Provost

Identifying complex neural circuitry from electron microscopic (EM) images may help unlock the mysteries of the brain. However, identifying this circuitry requires time-consuming, manual tracing (proofreading) due to the size and intricacy…

Quantitative Methods · Quantitative Biology 2014-09-04 Stephen M. Plaza

To address the challenges of low diagnostic accuracy in traditional bearing fault diagnosis methods, this paper proposes a novel fault diagnosis approach based on multi-scale spectrum feature images and deep learning. Firstly, the vibration…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Tongchao Luo , Mingquan Qiu , Zhenyu Wu , Zebo Zhao , Dingyou Zhang

Objective: Motor Imagery (MI) serves as a crucial experimental paradigm within the realm of Brain Computer Interfaces (BCIs), aiming to decoding motor intentions from electroencephalogram (EEG) signals. Method: Drawing inspiration from…

Quantitative Methods · Quantitative Biology 2023-10-31 Xiong Xiong , Li Su , Jinguo Huang , Guixia Kang

Precise characterization of stroke lesions from MRI data has immense value in prognosticating clinical and cognitive outcomes following a stroke. Manual stroke lesion segmentation is time-consuming and requires the expertise of neurologists…

Image and Video Processing · Electrical Eng. & Systems 2025-01-28 Liang Shang , William A. Sethares , Anusha Adluru , Andrew L. Alexander , Vivek Prabhakaran , Veena A. Nair , Nagesh Adluru

A prospective study was performed on neurosurgical samples from 18 patients to evaluate the use of Full-Field Optical Coherence Tomography (FF-OCT) in brain tumor diagnosis. FF-OCT captures en face slices of tissue samples at 1\mum…

Purpose: To compare the segmentation and detection performance of a deep learning model trained on a database of human-labelled clinical diffusion-weighted (DW) stroke lesions to a model trained on the same database enhanced with synthetic…

Frequency-specific patterns of neural activity are traditionally interpreted as sustained rhythmic oscillations, and related to cognitive mechanisms such as attention, high level visual processing or motor control. While alpha waves (8-12…

Signal Processing · Electrical Eng. & Systems 2018-05-29 Tom Dupré La Tour , Thomas Moreau , Mainak Jas , Alexandre Gramfort

Purpose Medical imaging diagnosis faces challenges, including low-resolution images due to machine artifacts and patient movement. This paper presents the Frequency-Guided U-Net (GFNet), a novel approach for medical image segmentation that…

Image and Video Processing · Electrical Eng. & Systems 2024-05-03 Haytham Al Ewaidat , Youness El Brag , Ahmad Wajeeh Yousef E'layan , Ali Almakhadmeh