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We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…

Data Structures and Algorithms · Computer Science 2007-05-23 Ming-Yang Kao , Manan Sanghi , Robert Schweller

Practically good error-correcting codes should have good parameters and efficient decoding algorithms. Some algebraically defined good codes such as cyclic codes, Reed-Solomon codes, and Reed-Muller codes have nice decoding algorithms.…

Information Theory · Computer Science 2019-11-19 Lucky Galvez , Jon-Lark Kim

Let H be the standard Hadamard matrix of order two and let K=2^{-1/2}H. It is known that the complete weight enumerator $\ W$ of a binary self-dual code of length $n$ is an eigenvector corresponding to an eigenvalue 1 of the Kronecker power…

Information Theory · Computer Science 2022-07-05 Vassil Yorgov

Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…

Combinatorics · Mathematics 2017-11-20 Yeow Meng Chee , Johan Chrisnata , Han Mao Kiah , Tuan Thanh Nguyen

Linear erasure codes with local repairability are desirable for distributed data storage systems. An [n, k, d] code having all-symbol (r, \delta})-locality, denoted as (r, {\delta})a, is considered optimal if it also meets the minimum…

Information Theory · Computer Science 2013-07-09 Wentu Song , Son Hoang Dau , Chau Yuen , Tiffany Jing Li

We construct constant-sized ensembles of linear error-correcting codes over any fixed alphabet that can correct a given fraction of adversarial erasures at rates approaching the Singleton bound arbitrarily closely. We provide several…

Information Theory · Computer Science 2025-04-07 Yeyuan Chen , Mahdi Cheraghchi , Nikhil Shagrithaya

Binary optimal codes often contain optimal or near-optimal subcodes. In this paper we show that this is true for the family of self-dual codes. One approach is to compute the optimum distance profiles (ODPs) of linear codes, which was…

Information Theory · Computer Science 2012-10-23 Finley Freibert , Jon-Lark Kim

Linear codes with few weights have applications in secret sharing, authentication codes, association schemes and strongly regular graphs. In this paper, several classes of two-weight and three-weight linear codes are presented and their…

Information Theory · Computer Science 2019-05-08 Gaopeng Jian

For lengths $36$, $48$ and $60$, we construct new ternary near-extremal self-dual codes with weight enumerators for which no ternary near-extremal self-dual codes were previously known to exist.

Information Theory · Computer Science 2025-07-04 Masaaki Harada

In this paper, based on the theory of defining sets, two classes of five-weight or six-weight linear codes over Fp are constructed. The weight distributions of the linear codes are determined by means of Weil sums and a new type of…

Information Theory · Computer Science 2021-04-09 Xina Zhang

Permutation codes of length $n$ and distance $d$ is a set of permutations on $n$ symbols, where the distance between any two elements in the set is at least $d$. Subgroup permutation codes are permutation codes with the property that the…

Information Theory · Computer Science 2010-06-01 Min-Zheng Shieh , Shi-Chun Tsai

A new method for constructing minimum-redundancy binary prefix codes is described. Our method does not explicitly build a Huffman tree; instead it uses a property of optimal prefix codes to compute the codeword lengths corresponding to the…

Data Structures and Algorithms · Computer Science 2016-09-30 Ahmed Belal , Amr Elmasry

A $q$-ary $t$-$(n,w,\lambda)$ design is a collection $\mathcal{A}$ of vectors of weight $w$ in $\mathbb{F}_{q}^{n}$ with the property that every vector of weight $t$ in $\mathbb{F}_{q}^{n}$ is contained in exactly $\lambda$ members of…

Information Theory · Computer Science 2026-03-16 Xinghao Wu , Junling Zhou

A linear-programming decoder for \emph{nonbinary} expander codes is presented. It is shown that the proposed decoder has the maximum-likelihood certificate properties. It is also shown that this decoder corrects any pattern of errors of a…

Information Theory · Computer Science 2016-11-17 Vitaly Skachek

Motivated by applications in DNA-based storage, we study explicit encoding and decoding schemes of binary strings satisfying locally balanced constraints, where the $(\ell,\delta)$-locally balanced constraint requires that the weight of any…

Information Theory · Computer Science 2022-01-31 Chen Wang , Ziyang Lu , Zhaojun Lan , Gennian Ge , Yiwei Zhang

The Damerau-Levenshtein distance between two sequences is the minimum number of operations (deletions, insertions, substitutions, and adjacent transpositions) required to convert one sequence into another. Notwithstanding a long history of…

Information Theory · Computer Science 2025-07-08 Zuo Ye , Gennian Ge

Error-correcting codes resilient to synchronization errors such as insertions and deletions are known as insdel codes. Due to their important applications in DNA storage and computational biology, insdel codes have recently become a focal…

Combinatorics · Mathematics 2024-08-21 Xiangliang Kong , Itzhak Tamo , Hengjia Wei

A quasi-Gray code of dimension $n$ and length $\ell$ over an alphabet $\Sigma$ is a sequence of distinct words $w_1,w_2,\dots,w_\ell$ from $\Sigma^n$ such that any two consecutive words differ in at most $c$ coordinates, for some fixed…

Information Theory · Computer Science 2018-07-18 Diptarka Chakraborty , Debarati Das , Michal Koucký , Nitin Saurabh

We study trace codes with defining set $L,$ a subgroup of the multiplicative group of an extension of degree $m$ of the alphabet ring $\mathbb{F}_3+u\mathbb{F}_3+u^{2}\mathbb{F}_{3},$ with $u^{3}=1.$ These codes are abelian, and their…

Information Theory · Computer Science 2016-12-06 Minjia Shi , Daitao Huang , Patrick Sole

Orthogonal designs are fundamental mathematical notions used in the construction of space time block codes for wireless transmissions. Designs have two important parameters, the rate and the decoding delay; the main problem of the theory is…

Information Theory · Computer Science 2012-03-05 Sophie Morier-Genoud , Valentin Ovsienko
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