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Enhancing sampling and analyzing simulations are central issues in molecular simulation. Recently, we introduced PLUMED, an open-source plug-in that provides some of the most popular molecular dynamics (MD) codes with implementations of a…

Computational Physics · Physics 2014-10-07 Gareth A. Tribello , Massimiliano Bonomi , Davide Branduardi , Carlo Camilloni , Giovanni Bussi

A fast algorithm for B-splines in mixed models is presented. B-splines have local support and are computational attractive, because the corresponding matrices are sparse. A key element of the new algorithm is that the local character of…

Computation · Statistics 2015-02-17 Martin P. Boer

We present a comparison of several modern C++ libraries providing high-level interfaces for programming multi- and many-core architectures on top of CUDA or OpenCL. The comparison focuses on the solution of ordinary differential equations…

Mathematical Software · Computer Science 2017-10-13 Denis Demidov , Karsten Ahnert , Karl Rupp , Peter Gottschling

In this paper, we present Spatialize, an open-source library that implements ensemble spatial interpolation, a novel method that combines the simplicity of basic interpolation methods with the power of classical geostatistical tools, like…

Flow matching is a scalable generative framework for characterizing continuous normalizing flows with wide-range applications. However, current state-of-the-art methods are not well-suited for modeling dynamical systems, as they construct…

Machine Learning · Computer Science 2026-05-15 Santanu Subhash Rathod , Pietro Liò , Xiao Zhang

Object-oriented programming languages such as Java and Objective C have become popular for implementing agent-based and other object-based simulations since objects in those languages can {\em reflect} (i.e. make runtime queries of an…

Mathematical Software · Computer Science 2008-10-22 Russell K. Standish , Duraid Madina

This paper describes a modular framework for the description of electroweak scattering and decay processes, including but not limited to Z-resonance physics. The framework consistently combines a complex-pole expansion near a s-channel…

High Energy Physics - Phenomenology · Physics 2023-10-12 Lisong Chen , Ayres Freitas

A new representation of splines that targets efficiency in the analysis of functional data is implemented. The efficiency is achieved through two novel features: using the recently introduced orthonormal spline bases, the so-called {\it…

Computation · Statistics 2024-09-30 Krzysztof Podgórski

Most particle induced X-ray emission (PIXE) data analysis codes are not focused on handling multilayered samples. We have developed an open-source library called "LibCPIXE", for PIXE data analysis. It is written in standard C and implements…

Materials Science · Physics 2007-07-18 C. Pascual-Izarra , N. P. Barradas , M. A. Reis

Since the advent of parallel algorithms in the C++17 Standard Template Library (STL), the STL has become a viable framework for creating performance-portable applications. Given multiple existing implementations of the parallel algorithms,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-12 Ruben Laso , Diego Krupitza , Sascha Hunold

A new efficient orthogonalization of the B-spline basis is proposed and contrasted with some previous orthogonalized methods. The resulting orthogonal basis of splines is best visualized as a net of functions rather than a sequence of them.…

Statistics Theory · Mathematics 2020-01-24 Xijia Liu , Hiba Nassar , Krzysztof PodgÓrski

We present libsharp, a code library for spherical harmonic transforms (SHTs), which evolved from the libpsht library, addressing several of its shortcomings, such as adding MPI support for distributed memory systems and SHTs of fields with…

Computational Physics · Physics 2015-06-15 Martin Reinecke , Dag Sverre Seljebotn

Performance, genericity and flexibility are three valuable qualities for scientific environments that tend to be antagonistic. C++ provides excellent support for both performances and genericity thanks to its support for (class and…

Software Engineering · Computer Science 2016-11-04 Akim Demaille

The aim of this work is to define and implement an extended C++ language to support the SIMD programming paradigm. The C++ programming language has been extended to express all the potentiality of an abstract SIMD machine consisting of a…

Programming Languages · Computer Science 2007-05-23 Alessandro Lonardo , Emanuele Panizzi , Benedetto Proietti

We present a modern C++17-compatible thread pool implementation, built from scratch with high-performance scientific computing in mind. The thread pool is implemented as a single lightweight and self-contained class, and does not have any…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-29 Barak Shoshany

This work introduces CLBlast, an open-source BLAS library providing optimized OpenCL routines to accelerate dense linear algebra for a wide variety of devices. It is targeted at machine learning and HPC applications and thus provides a fast…

Mathematical Software · Computer Science 2018-04-30 Cedric Nugteren

We present the C++ program library mr that allows us to reliably calculate the values of the running parameters in the Standard Model at high energy scales. The initial conditions are obtained by relating the running parameters in the…

High Energy Physics - Phenomenology · Physics 2016-12-05 Bernd A. Kniehl , Andrey F. Pikelner , Oleg L. Veretin

Spiking neural networks (SNNs) have been recently brought to light due to their promising capabilities. SNNs simulate the brain with higher biological plausibility compared to previous generations of neural networks. Learning with fewer…

Computer Vision and Pattern Recognition · Computer Science 2023-02-01 Shahriar Rezghi Shirsavar , Mohammad-Reza A. Dehaqani

The object oriented programming paradigm is widely used in science and engineering. Many open and commercial libraries are written in C++ and increasingly provide bindings to Python, which is much easier to learn, but still partly…

Programming Languages · Computer Science 2023-12-22 Markus Kloimwieder , Christoph Gadermaier

A piecewise Chebyshevian spline space is good for design when it possesses a B-spline basis and this property is preserved under knot insertion. The interest in such kind of spaces is justified by the fact that, similarly as for polynomial…

Numerical Analysis · Mathematics 2021-11-12 Carolina Vittoria Beccari , Giulio Casciola , Lucia Romani