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High-throughput sequencing file formats and tools encode coordinate intervals with respect to a reference sequence in at least four distinct, incompatible ways. Integrating data from and moving data between different formats has the…

Genomics · Quantitative Biology 2022-09-15 Charles Thomas Gregory , James S. Blachly

Source code representations are key in applying machine learning techniques for processing and analyzing programs. A popular approach in representing source code is neural source code embeddings that represents programs with…

Machine Learning · Computer Science 2022-06-17 Md Rafiqul Islam Rabin , Arjun Mukherjee , Omprakash Gnawali , Mohammad Amin Alipour

While significant attention has been recently focused on designing supervised deep semantic segmentation algorithms for vision tasks, there are many domains in which sufficient supervised pixel-level labels are difficult to obtain. In this…

Computer Vision and Pattern Recognition · Computer Science 2017-11-27 Xide Xia , Brian Kulis

Notwithstanding offering convenience and entertainment to society, Deepfake face swapping has caused critical privacy issues with the rapid development of deep generative models. Due to imperceptible artifacts in high-quality synthetic…

Computer Vision and Pattern Recognition · Computer Science 2025-11-05 Tianyi Wang , Mengxiao Huang , Harry Cheng , Bin Ma , Yinglong Wang

In this work we consider a generalization of the well-studied problem of coding for ``stuck-at'' errors, which we refer to as ``strong stuck-at'' codes. In the traditional framework of stuck-at codes, the task involves encoding a message…

Information Theory · Computer Science 2024-03-29 Roni Con , Ryan Gabrys , Eitan Yaakobi

We study blind fingerprinting, where the host sequence into which fingerprints are embedded is partially or completely unknown to the decoder. This problem relates to a multiuser version of the Gel'fand-Pinsker problem. The number of…

Information Theory · Computer Science 2008-03-04 Ying Wang , Pierre Moulin

Fragment-based shape signature techniques have proven to be powerful tools for computer-aided drug design. They allow scientists to search for target molecules with some similarity to a known active compound. They do not require reference…

Artificial Intelligence · Computer Science 2022-01-05 Thierry Petit , Randy J. Zauhar

In this paper we investigate the separation properties and related bounds of some codes. We tried to obtain a new existence result for $(w_1, w_2)$-separating codes and discuss the "optimality" of the upper bounds. Next we tried to study…

Cryptography and Security · Computer Science 2013-07-30 Myong-Son Sihn , Ryul Kim

Reproducing machine learning papers is essential for scientific progress but remains challenging for both humans and automated agents. Existing agent-based methods often struggle to fully and accurately reproduce implementation details such…

Software Engineering · Computer Science 2025-08-26 Mingyang Zhou , Quanming Yao , Lun Du , Lanning Wei , Da Zheng

Large-scale, fault-tolerant quantum computations will be enabled by quantum error-correcting codes (QECC). This work presents the first systematic technique to test the accuracy and effectiveness of different QECC decoding schemes by…

Quantum Physics · Physics 2023-11-22 Arshpreet Singh Maan , Alexandru Paler

This paper describes a fast and accurate semantic image segmentation approach that encodes not only the discriminative features from deep neural networks, but also the high-order context compatibility among adjacent objects as well as low…

Computer Vision and Pattern Recognition · Computer Science 2016-05-16 Falong Shen , Gang Zeng

The widespread deployment of large language models (LLMs) has intensified concerns around intellectual property (IP) protection, as model theft and unauthorized redistribution become increasingly feasible. To address this, model…

Computation and Language · Computer Science 2025-09-15 Zhenhua Xu , Xixiang Zhao , Xubin Yue , Shengwei Tian , Changting Lin , Meng Han

In this paper, an efficiently DWT-based watermarking technique is proposed to embed signatures in images to attest the owner identification and discourage the unauthorized copying. This paper deals with a fuzzy inference filter to choose…

Multimedia · Computer Science 2010-07-30 Ming-Shing Hsieh

Semiconstrained systems were recently suggested as a generalization of constrained systems, commonly used in communication and data-storage applications that require certain offending subsequences be avoided. In an attempt to apply…

Information Theory · Computer Science 2016-10-25 Ohad Elishco , Tom Meyerovitch , Moshe Schwartz

Currently, deep learning models are easily exposed to data leakage risks. As a distributed model, Split Learning thus emerged as a solution to address this issue. The model is splitted to avoid data uploading to the server and reduce…

Cryptography and Security · Computer Science 2025-03-10 Zhangting Lin , Mingfu Xue , Kewei Chen , Wenmao Liu , Xiang Gao , Leo Yu Zhang , Jian Wang , Yushu Zhang

In this work, we present an abstract framework for some algebraic error-correcting codes with the aim of capturing codes that are list-decodable to capacity, along with their decoding algorithm. In the polynomial ideal framework, a code is…

Information Theory · Computer Science 2023-12-21 Siddharth Bhandari , Prahladh Harsha , Mrinal Kumar , Madhu Sudan

Automatic detection of phoneme or word-like units is one of the core objectives in zero-resource speech processing. Recent attempts employ self-supervised training methods, such as contrastive predictive coding (CPC), where the next frame…

Audio and Speech Processing · Electrical Eng. & Systems 2021-06-07 Saurabhchand Bhati , Jesús Villalba , Piotr Żelasko , Laureano Moro-Velazquez , Najim Dehak

Software clones are beneficial to detect security gaps and software maintenance in one programming language or across multiple languages. The existing work on source clone detection performs well but in a single programming language.…

Software Engineering · Computer Science 2022-05-11 Mohammad A. Yahya , Dae-Kyoo Kim

Contactless fingerprint recognition has gained increasing attention due to its advantages in hygiene and acquisition flexibility. However, the absence of physical contact constraints introduces severe nonlinear geometric distortions caused…

Computer Vision and Pattern Recognition · Computer Science 2026-05-06 Zhiyu Pan , Xiongjun Guan , Jianjiang Feng , Jie Zhou

We study sheaf codes, a type of linear codes with a fixed hierarchical collection of local codes, viewed as a sheaf of vector spaces on a finite topological space we call coded space. Many existing codes, such as tensor product codes,…

Information Theory · Computer Science 2024-03-07 Pavel Panteleev , Gleb Kalachev