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We develop the necessary theory in computational algebraic geometry to place Bayesian networks into the realm of algebraic statistics. We present an algebra{statistics dictionary focused on statistical modeling. In particular, we link the…

Machine Learning · Computer Science 2012-07-19 Luis David Garcia

In this article, the notion of a mathematical model in science is attempted to be enlightened from several points of view. In particular, it is shown that mathematical models are introduced differently and used differently in different…

History and Overview · Mathematics 2022-05-25 Inge S. Helland

To model modern large-scale datasets, we need efficient algorithms to infer a set of $P$ unknown model parameters from $N$ noisy measurements. What are fundamental limits on the accuracy of parameter inference, given finite signal-to-noise…

Machine Learning · Statistics 2016-09-07 Madhu Advani , Surya Ganguli

This paper is to show that most discrete models used for population dynamics in ecology are inherently pathological that their predications cannot be independently verified by experiments because they violate a fundamental principle of…

Populations and Evolution · Quantitative Biology 2007-05-23 Bo Deng

There is no compelling reason imposing that the methods of statistical mechanics should be restricted to the dynamical systems which follow the usual Boltzmann-Gibbs prescriptions. More specifically, ubiquitous natural and artificial…

Statistical Mechanics · Physics 2009-11-10 Constantino Tsallis

A classical problem of statistical inference is the valid specification of a model that can account for the statistical dependencies between observations when the true structure is dense, intractable, or unknown. To address this problem, a…

Statistics Theory · Mathematics 2023-10-19 Shane Sparkes , Lu Zhang

Cosmological fine-tuning has traditionally been associated with the narrowness of the intervals in which the parameters of the physical models must be located to make life possible. A more thorough approach focuses on the probability of the…

History and Philosophy of Physics · Physics 2022-04-26 Daniel Andrés Díaz-Pachón , Ola Hössjer , Robert J. Marks

Calculations and mechanistic explanations for the probabilistic movement of objects at the highly relevant cm length scales has been lacking and overlooked due to the complexity of current techniques. Predicting the final-configuration…

Quantum mechanics has irked physicists ever since its conception more than 100 years ago. While some of the misgivings, such as it being unintuitive, are merely aesthetic, quantum mechanics has one serious shortcoming: it lacks a physical…

Quantum Physics · Physics 2020-05-07 S. Hossenfelder , T. N. Palmer

A critical step in data analysis for many different types of experiments is the identification of features with theoretically defined shapes in N-dimensional datasets; examples of this process include finding peaks in multi-dimensional…

Data Analysis, Statistics and Probability · Physics 2022-08-25 Korak Kumar Ray , Anjali R. Verma , Ruben L. Gonzalez , Colin D. Kinz-Thompson

Statistical modeling is often used to measure the strength of evidence for or against hypotheses on given data. We have previously proposed an information-dynamic framework in support of a properly calibrated measurement scale for…

Statistics Theory · Mathematics 2023-07-19 V. J Vieland , S-C. Seok

In contrast to the symmetries of translation in space, rotation in space, and translation in time, the known laws of physics are not universally invariant under transformation of scale. However, the action can be invariant under change of…

Data Analysis, Statistics and Probability · Physics 2019-11-05 Erik D. Fagerholm , W. M. C. Foulkes , Yasir Gallero-Salas , Fritjof Helmchen , Karl J. Friston , Rosalyn J. Moran , Robert Leech

Statistical physics aims to describe properties of macroscale systems in terms of distributions of their microscale agents. Its central tool is the maximization of entropy, a variational principle. We review the history of this principle,…

Statistical Mechanics · Physics 2023-10-11 Jonathan Asher Pachter , Ying-Jen Yang , Ken A. Dill

Our conventional system of physical units is based on local or microscopic {\it dimensional} quantities which are {\it defined}, for convenience or otherwise aesthetic reasons, to be spacetime-independent. A more general choice of units may…

General Physics · Physics 2013-08-06 Meir Shimon

Statistics is sometimes described as the science of reasoning under uncertainty. Statistical models provide one view of this uncertainty, but what is frequently neglected is the 'invisible' portion of uncertainty: that assumed not to exist…

Methodology · Statistics 2026-03-18 Oliver L. Pescott , Robin J. Boyd , Gary D. Powney , Gavin B. Stewart

In a model with more than one scalar doublet, the parameter space encloses both physical and unphysical information. Invariant theory provides a detailed description of the counting and characterization of the physical parameter space. The…

High Energy Physics - Phenomenology · Physics 2021-05-28 M. P. Bento

Sphere packings are essential to the development of physical models for powders, composite materials, and the atomic structure of the liquid state. There is a strong scientific need to be able to assess the fit of packing models to data,…

Methodology · Statistics 2009-10-31 Jeffrey Picka

Parameter inference is a fundamental problem in data-driven modeling. Given observed data that is believed to be a realization of some parameterized model, the aim is to find parameter values that are able to explain the observed data. In…

Data Structures and Algorithms · Computer Science 2016-04-20 Carlo Albert , Simone Ulzega , Ruedi Stoop

Ecosystems display a complex spatial organization. Ecologists have long tried to characterize them by looking at how different measures of biodiversity change across spatial scales. Ecological neutral theory has provided simple predictions…

Populations and Evolution · Quantitative Biology 2017-12-13 Simone Pigolotti , Massimo Cencini , Daniel Molina , Miguel A. Muñoz

A recent proposal for a superdeterministic account of quantum mechanics, named Invariant-set theory, appears to bring ideas from several diverse fields like chaos theory, number theory and dynamical systems to quantum foundations. However,…

Quantum Physics · Physics 2022-03-11 Indrajit Sen