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We propose a path cover adaptive algebraic multigrid (PC-$\alpha$AMG) method for solving linear systems of weighted graph Laplacians and can also be applied to discretized second order elliptic partial differential equations. The…

Numerical Analysis · Mathematics 2018-06-20 Xiaozhe Hu , Junyuan Lin , Ludmil T. Zikatanov

The {\sc $c$-Balanced Separator} problem is a graph-partitioning problem in which given a graph $G$, one aims to find a cut of minimum size such that both the sides of the cut have at least $cn$ vertices. In this paper, we present new…

Data Structures and Algorithms · Computer Science 2010-11-22 Manjish Pal

Given a connected undirected weighted graph, we are concerned with problems related to partitioning the graph. First of all we look for the closest disconnected graph (the minimum cut problem), here with respect to the Euclidean norm. We…

Numerical Analysis · Mathematics 2017-12-19 Eleonora Andreotti , Dominik Edelmann , Nicola Guglielmi , Christian Lubich

Learning causal structures from interventional data is a fundamental problem with broad applications across various fields. While many previous works have focused on recovering the entire causal graph, in practice, there are scenarios where…

Machine Learning · Computer Science 2023-11-01 Kirankumar Shiragur , Jiaqi Zhang , Caroline Uhler

Partitioning a graph into blocks of roughly equal weight while cutting only few edges is a fundamental problem in computer science with numerous practical applications. While shared-memory parallel partitioners have recently matured to…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-06 Peter Sanders , Daniel Seemaier

Effective causal discovery is essential for learning the causal graph from observational data. The linear non-Gaussian acyclic model (LiNGAM) operates under the assumption of a linear data generating process with non-Gaussian noise in…

Machine Learning · Computer Science 2025-02-28 Hans Jarett J. Ong , Brian Godwin S. Lim , Renzo Roel P. Tan , Kazushi Ikeda

We study the problem of graph structure identification, i.e., of recovering the graph of dependencies among time series. We model these time series data as components of the state of linear stochastic networked dynamical systems. We assume…

Machine Learning · Computer Science 2023-06-29 Sérgio Machado , Anirudh Sridhar , Paulo Gil , Jorge Henriques , José M. F. Moura , Augusto Santos

A real-world graph has a complex topological structure, which is often formed by the interaction of different latent factors. However, most existing methods lack consideration of the intrinsic differences in relations between nodes caused…

Machine Learning · Computer Science 2024-01-26 Shuai Zheng , Zhenfeng Zhu , Zhizhe Liu , Jian Cheng , Yao Zhao

Graph data widely exists in real life, with large amounts of data and complex structures. It is necessary to map graph data to low-dimensional embedding. Graph classification, a critical graph task, mainly relies on identifying the…

Machine Learning · Computer Science 2023-10-26 Yuan Li , Li Liu , Penggang Chen , Youmin Zhang , Guoyin Wang

Verifying graph algorithms has long been considered challenging in separation logic, mainly due to structural sharing between graph subcomponents. We show that these challenges can be effectively addressed by representing graphs as a…

Logic in Computer Science · Computer Science 2025-07-10 Marcos Grandury , Aleksandar Nanevski , Alexander Gryzlov

Dual graphs have been applied to model RNA secondary structures with pseudoknots, or intertwined base pairs. In previous works, a linear-time algorithm was introduced to partition dual graphs into maximally connected components called…

Biomolecules · Quantitative Biology 2021-09-09 Louis Petingi

Graph convolutional networks (GCN) have recently demonstrated their potential in analyzing non-grid structure data that can be represented as graphs. The core idea is to encode the local topology of a graph, via convolutions, into the…

Machine Learning · Computer Science 2021-01-12 Yiding Yang , Xinchao Wang , Mingli Song , Junsong Yuan , Dacheng Tao

The planar separator theorem by Lipton and Tarjan [FOCS '77, SIAM Journal on Applied Mathematics '79] states that any planar graph with $n$ vertices has a balanced separator of size $O(\sqrt{n})$ that can be found in linear time. This…

Data Structures and Algorithms · Computer Science 2025-12-02 Édouard Bonnet , Tuukka Korhonen , Hung Le , Jason Li , Tomáš Masařík

In this work, a graph partitioning problem in a fixed number of connected components is considered. Given an undirected graph with costs on the edges, the problem consists of partitioning the set of nodes into a fixed number of subsets with…

Optimization and Control · Mathematics 2024-11-12 Mishelle Cordero , Andrés Miniguano-Trujillo , Diego Recalde , Ramiro Torres , Polo Vaca

Contrastive learning methods have attracted considerable attention due to their remarkable success in analyzing graph-structured data. Inspired by the success of contrastive learning, we propose a novel framework for contrastive…

Machine Learning · Computer Science 2023-06-21 Xiaojuan Zhang , Jun Fu , Shuang Li

Max-linear Bayesian networks (MLBNs) are a relatively recent class of structural equation models which arise when the random variables involved have heavy-tailed distributions. Unlike most directed graphical models, MLBNs are typically not…

Machine Learning · Statistics 2025-08-20 Carlos Améndola , Benjamin Hollering , Francesco Nowell

This paper studies the problem of detecting anomalous graphs using a machine learning model trained on only normal graphs, which has many applications in molecule, biology, and social network data analysis. We present a self-discriminative…

Machine Learning · Computer Science 2023-10-11 Jinyu Cai , Yunhe Zhang , Jicong Fan

Learning a Bayesian network (BN) from data can be useful for decision-making or discovering causal relationships. However, traditional methods often fail in modern applications, which exhibit a larger number of observed variables than data…

Computation · Statistics 2018-06-26 Raj Agrawal , Tamara Broderick , Caroline Uhler

Approximate message passing (AMP) is a class of low-complexity, scalable algorithms for solving high-dimensional linear regression tasks where one wishes to recover an unknown signal from noisy, linear measurements. AMP is an iterative…

Information Theory · Computer Science 2019-08-27 Yanting Ma , Cynthia Rush , Dror Baron

We initiate the study of the shortest reconfiguration problem for independent sets under the adjacency relation derived from the independent set polytope. Given a graph and two independent sets, the problem asks for a shortest sequence…

Data Structures and Algorithms · Computer Science 2026-04-28 Jean Cardinal , Kevin Mann , Akira Suzuki , Takahiro Suzuki , Yuma Tamura , Xiao Zhou