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In this paper, we propose a new method to perform data augmentation in a reliable way in the High Dimensional Low Sample Size (HDLSS) setting using a geometry-based variational autoencoder. Our approach combines a proper latent space…

Machine Learning · Statistics 2023-01-18 Clément Chadebec , Elina Thibeau-Sutre , Ninon Burgos , Stéphanie Allassonnière

Extracting large amounts of data from biological samples is not feasible due to radiation issues, and image processing in the small-data regime is one of the critical challenges when working with a limited amount of data. In this work, we…

Machine Learning · Computer Science 2020-07-21 Varun Mannam , Arman Kazemi

A shift-invariant variational autoencoder (shift-VAE) is developed as an unsupervised method for the analysis of spectral data in the presence of shifts along the parameter axis, disentangling the physically-relevant shifts from other…

Disordered Systems and Neural Networks · Physics 2021-04-22 Yongtao Liu , Rama K. Vasudevan , Kyle Kelley , Dohyung Kim , Yogesh Sharma , Mahshid Ahmadi , Sergei V. Kalinin , Maxim Ziatdinov

We propose an algorithm, guided variational autoencoder (Guided-VAE), that is able to learn a controllable generative model by performing latent representation disentanglement learning. The learning objective is achieved by providing…

Computer Vision and Pattern Recognition · Computer Science 2020-04-06 Zheng Ding , Yifan Xu , Weijian Xu , Gaurav Parmar , Yang Yang , Max Welling , Zhuowen Tu

We introduce a novel variational autoencoder (VAE) architecture that can generate realistic and diverse high energy physics events. The model we propose utilizes several techniques from VAE literature in order to simulate high fidelity jet…

High Energy Physics - Phenomenology · Physics 2020-09-11 Kosei Dohi

Machine learning methods often need a large amount of labeled training data. Since the training data is assumed to be the ground truth, outliers can severely degrade learned representations and performance of trained models. Here we apply…

Machine Learning · Statistics 2019-12-24 Haleh Akrami , Anand A. Joshi , Jian Li , Sergul Aydore , Richard M. Leahy

We propose a variational autoencoder (VAE) approach for parameter estimation in nonlinear mixed-effects models based on ordinary differential equations (NLME-ODEs) using longitudinal data from multiple subjects. In moderate dimensions,…

Methodology · Statistics 2026-02-11 Zhe Li , Mélanie Prague , Rodolphe Thiébaut , Quentin Clairon

Deep generative models are increasingly becoming integral parts of the in silico molecule design pipeline and have dual goals of learning the chemical and structural features that render candidate molecules viable while also being flexible…

Biomolecules · Quantitative Biology 2021-06-08 Yair Schiff , Vijil Chenthamarakshan , Karthikeyan Natesan Ramamurthy , Payel Das

Sparse Autoencoders (SAEs) are a powerful dictionary learning technique for decomposing neural network activations, translating the hidden state into human ideas with high semantic value despite no external intervention or guidance.…

Machine Learning · Computer Science 2025-12-17 Albert Miao , Chenliang Zhou , Jiawei Zhou , Cengiz Oztireli

The development of deep learning methods for magnetic resonance spectroscopy (MRS) is often hindered by limited availability of large, high-quality training datasets. While physics-based simulations are commonly used to mitigate this…

Climate anomalies significantly impact terrestrial carbon cycle dynamics, necessitating robust methods for detecting and analyzing anomalous behavior in plant productivity. This study presents a novel application of variational autoencoders…

Machine Learning · Computer Science 2025-10-07 Bharat Sharma , Jitendra Kumar

Deep generative models have been enjoying success in modeling continuous data. However it remains challenging to capture the representations for discrete structures with formal grammars and semantics, e.g., computer programs and molecular…

Machine Learning · Computer Science 2018-02-27 Hanjun Dai , Yingtao Tian , Bo Dai , Steven Skiena , Le Song

Deep probabilistic generative models have achieved incredible success in many fields of application. Among such models, variational autoencoders (VAEs) have proved their ability in modeling a generative process by learning a latent…

Machine Learning · Computer Science 2022-12-16 Eleonora Grassucci , Danilo Comminiello , Aurelio Uncini

Variational autoencoder (VAE) neural networks can be trained to generate power system states that capture both marginal distribution and multivariate dependencies of historical data. The coordinates of the latent space codes of VAEs have…

Systems and Control · Electrical Eng. & Systems 2023-03-22 Chenguang Wang , Ensieh Sharifnia , Simon H. Tindemans , Peter Palensky

We present a conditional variational autoencoder (CVAE) that generates stellar spectra covering 4000 $\le$ $T_{\mathrm{eff}$ $\le$ 11,000 K, $2.0 \le \log g \le 5.0$ dex, $-1.5 \le [\mathrm{M}/\mathrm{H}] \le +1.5$ dex, $v\sin i \le 300$…

Solar and Stellar Astrophysics · Physics 2025-08-26 Marwan Gebran , Ian Bentley

Discrete latent variables are considered important for real world data, which has motivated research on Variational Autoencoders (VAEs) with discrete latents. However, standard VAE training is not possible in this case, which has motivated…

Machine Learning · Statistics 2023-03-27 Enrico Guiraud , Jakob Drefs , Jörg Lücke

In this tutorial, we explore Variational Autoencoders (VAEs), an essential framework for unsupervised learning, particularly suited for high-dimensional datasets such as neuroimaging. By integrating deep learning with Bayesian inference,…

Image and Video Processing · Electrical Eng. & Systems 2025-01-15 C. Vázquez-García , F. J. Martínez-Murcia , F. Segovia Román , Juan M. Górriz Sáez

An effective approach to non-parallel voice conversion (VC) is to utilize deep neural networks (DNNs), specifically variational auto encoders (VAEs), to model the latent structure of speech in an unsupervised manner. A previous study has…

Audio and Speech Processing · Electrical Eng. & Systems 2020-04-09 Wen-Chin Huang , Hsin-Te Hwang , Yu-Huai Peng , Yu Tsao , Hsin-Min Wang

Continuous speech representations based on Variational Autoencoders (VAEs) have emerged as a promising alternative to traditional spectrogram or discrete token based features for speech generation and reconstruction. Recent research has…

Sound · Computer Science 2026-05-26 Changhao Cheng , Wei Wang , Wangyou Zhang , Dongya Jia , Jian Wu , Zhuo Chen , Yanmin Qian

Particle accelerators are time-varying systems whose components are perturbed by external disturbances. Tuning accelerators can be a time-consuming process involving manual adjustment of multiple components, such as RF cavities, to minimize…

Accelerator Physics · Physics 2024-08-09 Mahindra Rautela , Alan Williams , Alexander Scheinker