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We present a new approach for improving motif scanning accuracy, based on analysis of in-between similarity. Given a set of motifs obtained from a scanning process, we construct an associated weighted graph. We also compute the expected…

Quantitative Methods · Quantitative Biology 2022-03-23 Braslav Rabar , Keti Nižetić , Pavle Goldstein

We propose neighborhood-based core decomposition: a novel way of decomposing hypergraphs into hierarchical neighborhood-cohesive subhypergraphs. Alternative approaches to decomposing hypergraphs, e.g., reduction to clique or bipartite…

Social and Information Networks · Computer Science 2023-04-11 Naheed Anjum Arafat , Arijit Khan , Arpit Kumar Rai , Bishwamittra Ghosh

On an evolving graph that is continuously updated by a high-velocity stream of edges, how can one efficiently maintain if two vertices are connected? This is the connectivity problem, a fundamental and widely studied problem on graphs. We…

Data Structures and Algorithms · Computer Science 2016-02-18 Natcha Simsiri , Kanat Tangwongsan , Srikanta Tirthapura , Kun-Lung Wu

We present CLIPPER+, an algorithm for finding maximal cliques in unweighted graphs for outlier-robust global registration. The registration problem can be formulated as a graph and solved by finding its maximum clique. This formulation…

Robotics · Computer Science 2024-02-26 Kaveh Fathian , Tyler Summers

Over the past decade, there has been increasing interest in distributed/parallel algorithms for processing large-scale graphs. By now, we have quite fast algorithms -- usually sublogarithmic-time and often $poly(\log\log n)$-time, or even…

Data Structures and Algorithms · Computer Science 2021-06-30 Amartya Shankha Biswas , Michal Dory , Mohsen Ghaffari , Slobodan Mitrović , Yasamin Nazari

In this paper we give the first efficient algorithms for the $k$-center problem on dynamic graphs undergoing edge updates. In this problem, the goal is to partition the input into $k$ sets by choosing $k$ centers such that the maximum…

Data Structures and Algorithms · Computer Science 2024-01-10 Emilio Cruciani , Sebastian Forster , Gramoz Goranci , Yasamin Nazari , Antonis Skarlatos

Given a simple graph $G$ and an integer $k$, the goal of $k$-Clique problem is to decide if $G$ contains a complete subgraph of size $k$. We say an algorithm approximates $k$-Clique within a factor $g(k)$ if it can find a clique of size at…

Computational Complexity · Computer Science 2022-08-04 Bingkai Lin , Xuandi Ren , Yican Sun , Xiuhan Wang

We implement a new algorithm for listing all maximal cliques in sparse graphs due to Eppstein, L\"offler, and Strash (ISAAC 2010) and analyze its performance on a large corpus of real-world graphs. Our analysis shows that this algorithm is…

Data Structures and Algorithms · Computer Science 2011-03-03 David Eppstein , Darren Strash

The maximal clique enumeration (MCE) problem has numerous applications in biology, chemistry, sociology, and graph modeling. Though this problem is well studied, most current research focuses on finding solutions in large sparse graphs or…

Data Structures and Algorithms · Computer Science 2018-01-03 Pablo San Segundo , Jorge Artieda , Darren Strash

The $k$-defective clique model relaxes the strict completeness constraint of the traditional clique by allowing up to $k$ missing edges, providing a robust formulation for detecting cohesive structures in noisy graphs. Consequently, the…

Databases · Computer Science 2026-05-19 Kewu Yang , Kaiqiang Yu , Shengxin Liu , Zhaoquan Gu

Clique and near-clique counts are important graph properties with applications in graph generation, graph modeling, graph analytics, community detection among others. They are the archetypal examples of dense subgraphs. While there are…

Social and Information Networks · Computer Science 2020-06-25 Shweta Jain , C. Seshadhri

In this paper, we investigate the problem of (k,r)-core which intends to find cohesive subgraphs on social networks considering both user engagement and similarity perspectives. In particular, we adopt the popular concept of k-core to…

Social and Information Networks · Computer Science 2016-11-11 Fan Zhang , Ying Zhang , Lu Qin , Wenjie Zhang , Xuemin Lin

Maintaining a dynamic $k$-core decomposition is an important problem that identifies dense subgraphs in dynamically changing graphs. Recent work by Liu et al. [SPAA 2022] presents a parallel batch-dynamic algorithm for maintaining an…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-17 Quanquan C. Liu , Julian Shun , Igor Zablotchi

Identifying dense subgraphs known as quasi-cliques is pivotal in numerous graph mining tasks across domains such as social networks, biology, and e-commerce. While prior work has developed efficient algorithms for quasi-clique detection in…

Social and Information Networks · Computer Science 2026-05-27 Jingbang Chen , Weinuo Li , Yingli Zhou , Hao Wu , Can Wang , Yixiang Fang , Chenhao Ma

Mining cohesive subgraphs in attributed graphs is an essential problem in the domain of graph data analysis. The integration of fairness considerations significantly fuels interest in models and algorithms for mining fairness-aware cohesive…

Databases · Computer Science 2023-12-08 Qi Zhang , Rong-Hua Li , Zifan Zheng , Hongchao Qin , Ye Yuan , Guoren Wang

Obtaining scalable algorithms for hierarchical agglomerative clustering (HAC) is of significant interest due to the massive size of real-world datasets. At the same time, efficiently parallelizing HAC is difficult due to the seemingly…

Data Structures and Algorithms · Computer Science 2022-06-24 Laxman Dhulipala , David Eisenstat , Jakub Łącki , Vahab Mirronki , Jessica Shi

Discovering large cohesive subgraphs is a key task for graph mining. Existing models, such as clique, k-plex, and {\gamma}-quasi-clique, use fixed density thresholds that overlook the natural decay of connectivity as the subgraph size…

Social and Information Networks · Computer Science 2026-02-12 Song Kim , Hyewon Kim , Kaiqiang Yu , Taejoon Han , Junghoon Kim , Susik Yoon , Jungeun Kim

Hypergraphs offer flexible and robust data representations for many applications, but methods that work directly on hypergraphs are not readily available and tend to be prohibitively expensive. Much of the current analysis of hypergraphs…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-28 Xu T. Liu , Jesun Firoz , Sinan Aksoy , Ilya Amburg , Andrew Lumsdaine , Cliff Joslyn , Assefaw H. Gebremedhin , Brenda Praggastis

SCAN (Structural Clustering Algorithm for Networks) is a well-studied, widely used graph clustering algorithm. For large graphs, however, sequential SCAN variants are prohibitively slow, and parallel SCAN variants do not effectively share…

Databases · Computer Science 2021-04-01 Tom Tseng , Laxman Dhulipala , Julian Shun

We study deterministic algorithms for computing graph cuts, with focus on two fundamental problems: balanced sparse cut and $k$-vertex connectivity for small $k$ ($k=O(\polylog n)$). Both problems can be solved in near-linear time with…

Data Structures and Algorithms · Computer Science 2019-10-21 Yu Gao , Jason Li , Danupon Nanongkai , Richard Peng , Thatchaphol Saranurak , Sorrachai Yingchareonthawornchai
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