Related papers: Mixed Integer Programming for Searching Maximum Qu…
Mining maximal subgraphs with cohesive structures from a bipartite graph has been widely studied. One important cohesive structure on bipartite graphs is k-biplex, where each vertex on one side disconnects at most k vertices on the other…
We design and implement an efficient parallel algorithm for finding a perfect matching in a weighted bipartite graph such that weights on the edges of the matching are large. This problem differs from the maximum weight matching problem,…
Recently, Daligault, Rao and Thomass\'e asked in [3] if every hereditary class which is well-quasi-ordered by the induced subgraph relation is of bounded clique-width. There are two reasons why this questions is interesting. First, it…
Motivated by applications in community detection and dense subgraph discovery, we consider new clustering objectives in hypergraphs and bipartite graphs. These objectives are parameterized by one or more resolution parameters in order to…
We present an $\tilde O(m+n^{1.5})$-time randomized algorithm for maximum cardinality bipartite matching and related problems (e.g. transshipment, negative-weight shortest paths, and optimal transport) on $m$-edge, $n$-node graphs. For…
We present a theoretical analysis of a recent whole body motion planning method, the Randomized Possibility Graph, which uses a high-level decomposition of the feasibility constraint manifold in order to rapidly find routes that may lead to…
Subgraph queries also known as subgraph isomorphism search is a fundamental problem in querying graph-like structured data. It consists to enumerate the subgraphs of a data graph that match a query graph. This problem arises in many…
The Maximum Common Subgraph (MCS) problem plays a key role in many applications, including cheminformatics, bioinformatics, and pattern recognition, where it is used to identify the largest shared substructure between two graphs. Although…
Spectral graph bisections are a popular heuristic aimed at approximating the solution of the NP-complete graph bisection problem. This technique, however, does not always provide a robust tool for graph partitioning. Using a special class…
A biclique of a graph $G$ is a maximal induced complete bipartite subgraph of $G$. The edge-biclique graph of $G$, $KB_e(G)$, is the edge-intersection graph of the bicliques of $G$. A graph $G$ diverges (resp. converges or is periodic)…
In the final project paper we consider a graph parameter called readability. Motivation for readability comes from bioinformatics applications. Graphs arising in problems related to genome sequencing are of small readability, which…
Mining cohesive subgraphs in attributed graphs is an essential problem in the domain of graph data analysis. The integration of fairness considerations significantly fuels interest in models and algorithms for mining fairness-aware cohesive…
We consider the problem of minimizing the makespan on batch processing identical machines, subject to compatibility constraints, where two jobs are compatible if they can be processed simultaneously in a same batch. These constraints are…
Some microfluidic lab-on-chip devices contain modules whose function is to mix two fluids, called reactant and buffer, in desired proportions. In one of the technologies for fluid mixing the process can be represented by a directed acyclic…
A covering integer program (CIP) is a mathematical program of the form: min {c^T x : Ax >= 1, 0 <= x <= u, x integer}, where A is an m x n matrix, and c and u are n-dimensional vectors, all having non-negative entries. In the online…
We introduce a new distributed algorithm for aligning graphs or finding substructures within a given graph. It is based on the cavity method and is used to study the maximum-clique and the graph-alignment problems in random graphs. The…
We give a comprehensive study of bin packing with conflicts (BPC). The input is a set $I$ of items, sizes $s:I \rightarrow [0,1]$, and a conflict graph $G = (I,E)$. The goal is to find a partition of $I$ into a minimum number of independent…
We propose an approach based on quadratic approximations for solving general Mixed-Integer Nonlinear Programming (MINLP) problems. Specifically, our approach entails the global approximation of the epigraphs of constraint functions by means…
Cohesive subgraph mining in bipartite graphs becomes a popular research topic recently. An important structure k-bitruss is the maximal cohesive subgraph where each edge is contained in at least k butterflies (i.e., (2, 2)-bicliques). In…
Beyond-planarity focuses on the study of geometric and topological graphs that are in some sense nearly-planar. Here, planarity is relaxed by allowing edge crossings, but only with respect to some local forbidden crossing configurations.…